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Package Details: structure 2.3.4-4
Git Clone URL: | https://aur.archlinux.org/structure.git (read-only, click to copy) |
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Package Base: | structure |
Description: | Program for using multi-locus genotype data to investigate population structure. |
Upstream URL: | http://pritch.bsd.uchicago.edu/structure.html |
Licenses: | |
Submitter: | bmpvieira |
Maintainer: | Stunts |
Last Packager: | Stunts |
Votes: | 2 |
Popularity: | 0.000000 |
First Submitted: | 2010-04-14 14:38 |
Last Updated: | 2016-02-26 15:52 |
Dependencies (2)
- java-runtime=8 (jdk5, tuxjdk, jre7-openjdk-infinality, java-8-openjdk-shenandoah, jre8-openjdk-infinality, java-gcj-compat, jdk9, jre9, jdk-devel, jre10, jdk8-arm64, jdk6, jdk12-openj9-bin, zulu-12-bin, jre6, jre12, jdk8-openjdk-dcevm, jdk11-graalvm-ee-bin, server-jre, jdk8-arm, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jre8-openjdk-jetbrains, jre8-openjdk-shenandoah, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jre7, jre14, jdk8-jetbrains, jdk7r1-j9-bin, jdk7-j9-bin, zulu-14-bin, zulu-13-bin, jdk-bcl, jre-bcl, amazon-corretto-15, jre-openj9, jdk11-openj9-bin, java-openjdk-bin, amazon-corretto-8, amazon-corretto-11, jdk11-openjdk-dcevm-conflicts-fixed, jre8, jdk8, jdk-openj9-bin, jre, jdk11-adoptopenjdk, jdk-adoptopenjdk, zulu-8-bin, zulu-11-bin, zulu-15-bin, liberica-jdk-11-bin, liberica-jdk-11-lite-bin, liberica-jre-11-full-bin, liberica-jdk-8-full-bin, liberica-jdk-full-bin, liberica-jdk-11-full-bin, liberica-jre-11-bin, liberica-jre-8-full-bin, zulu-embedded-jdk, jdk8-j9-bin, zulu-embedded-jdk11, jdk8-openj9-bin, zulu-embedded-jdk8, jre11, sapmachine-jdk-bin, jre11-jetbrains-imfix, jre-jetbrains, jdk11-graalvm-bin, jdk8-graalvm-bin, jre8-adoptopenjdk, jdk-arm, jdk-jetbrains, java-openjdk-ea-bin, java-openjdk-loom-ea-bin, jre-openjdk, jre11-openjdk, jre7-openjdk, jre8-openjdk)
- java-environment (jdk5, tuxjdk, jdk7-openjdk-infinality, java-8-openjdk-shenandoah, jdk8-openjdk-infinality, java-gcj-compat, jdk9, zulu-10-bin, jdk-devel, jdk8-arm64, jdk6, jdk12-openj9-bin, zulu-12-bin, jdk12, jdk8-openjdk-dcevm, jdk11-graalvm-ee-bin, jdk8-arm, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jdk8-openjdk-jetbrains, jdk8-openjdk-shenandoah, jdk10-openj9-bin, jdk14-openj9-bin, jdk7, jdk8-jetbrains, jdk7r1-j9-bin, jdk7-j9-bin, zulu-14-bin, zulu-13-bin, jdk-bcl, amazon-corretto-15, jdk-openj9, jdk11-openj9-bin, java-openjdk-bin, amazon-corretto-8, amazon-corretto-11, jdk11-openjdk-dcevm-conflicts-fixed, jdk8, jdk-openj9-bin, jdk, jdk11-adoptopenjdk, jdk-adoptopenjdk, zulu-8-bin, zulu-11-bin, zulu-15-bin, liberica-jdk-11-bin, liberica-jdk-11-lite-bin, liberica-jre-11-full-bin, liberica-jdk-8-full-bin, liberica-jdk-full-bin, liberica-jdk-11-full-bin, liberica-jre-11-bin, liberica-jre-8-full-bin, zulu-embedded-jdk, jdk8-j9-bin, zulu-embedded-jdk11, jdk8-openj9-bin, zulu-embedded-jdk8, jdk11, sapmachine-jdk-bin, jdk11-jetbrains-imfix, jre-jetbrains, jdk11-graalvm-bin, jdk8-graalvm-bin, jdk8-adoptopenjdk, jdk-arm, jdk-jetbrains, java-openjdk-ea-bin, java-openjdk-loom-ea-bin, jdk-openjdk, jdk11-openjdk, jdk7-openjdk, jdk8-openjdk) (make)
Required by (0)
Sources (3)
- http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/html/ran.c.patch
- http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_frontend_source.tar.gz
- http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz
Latest Comments
1 2 Next › Last »
Stunts commented on 2016-02-26 15:54
The issue seems to have been with java7.
I have updated the PKGBUILD to run with jre8, which fixes things.
Stunts commented on 2016-02-25 22:33
Hummmm... seems to work fine here.
I'll look into it. (It had been a long time since I used the GUI for structure).
Also, sorry about the spam, but maybe try this alternative interface (with threading):
https://github.com/StuntsPT/Structure_threader
cyrilccros commented on 2016-02-25 18:04
Word of warning, the GUI seems defective (can't create a new project) in version 2.3.4. The issue is upstream (a friend on another distro ran into the same issue).
Stunts commented on 2014-12-11 23:15
Adopted, updated and patched!
Thanks to @bmpvieira for creating and maintaining the package.
I'll take care of it until you return.
bmpvieira commented on 2013-07-30 15:28
Thanks! :)
Stunts commented on 2013-07-30 15:12
Updated PKGBUILD here:
https://gist.github.com/StuntsPT/6113829
Enjoy!
Stunts commented on 2010-11-08 15:07
You should, however change 'java-environment' with 'java-runtime' in $depends.
Stunts commented on 2010-11-08 15:01
Works for me as it is...
machoo02 commented on 2010-11-04 12:28
And thanks for packaging this!!
machoo02 commented on 2010-11-04 12:28
sorry...what I posted below did not work as expected. This:
depends=('sh' 'java-environment')
[[ $CARCH == "x86_64" ]] && depends=("${depends[@]}" 'lib32-glibc')
works as expected.