Package Details: sra-tools 2.10.0-1

Git Clone URL: https://aur.archlinux.org/sra-tools.git (read-only, click to copy)
Package Base: sra-tools
Description: The SRA Toolkit and SDK from NCBI is a collection of tools and libraries for using data in the INSDC Sequence Read Archives.
Upstream URL: http://github.com/ncbi/sra-tools/
Licenses: custom:PublicDomain
Provides: sra-tools
Submitter: apolih
Maintainer: apolih (gamanakis)
Last Packager: gamanakis
Votes: 3
Popularity: 0.003208
First Submitted: 2016-01-29 22:50
Last Updated: 2019-08-25 03:22

Dependencies (6)

Required by (0)

Sources (2)

Latest Comments

pdimens commented on 2019-07-05 13:27

Error: Failed to commit transaction: failed retrieving file 'perl-file-copy-recursive-0.44-2-any.pkg.tar.xz' from ct.mirror.garr.it : Connection timed out after 30000 milliseconds

Galaxy commented on 2019-05-29 07:35

'/usr/bin/kget -> kget.2' is conflicted with Extra/kget at <https://www.archlinux.org/packages/extra/x86_64/kget/>.

Would you rename the one in sra-tools ?

mollitz commented on 2018-12-19 15:27

pkgbuild fails because the installer is not capable of accessing https:

Running 43 test cases...

*** No errors detected ++++++++++++++++++++++++++++++++++++++++++++++++++++++ Run /tmp/trizen-moritz/ncbi-vdb/src/build_dir/ncbi-vdb/linux/gcc/x86_64/rel/test-bin/test-ngs_sra Running 67 test cases... 2018-12-19T15:20:16 test-ngs_sra.1.0.0 sys: connection failed while opening file within cryptographic module - mbedtls_ssl_handshake returned -76 ( NET - Reading information from the socket failed ) 2018-12-19T15:20:16 test-ngs_sra.1.0.0 int: file not open while identifying file within network system module - cannot KSocketGetRemoteEndpoint 2018-12-19T15:20:16 test-ngs_sra.1.0.0 sys: connection failed while opening file within cryptographic module - ktls_handshake failed while accessing unknown IP from '10.5.117.40' 2018-12-19T15:20:16 test-ngs_sra.1.0.0 sys: connection failed while opening file within cryptographic module - Failed to create TLS stream for 'sra-download.ncbi.nlm.nih.gov' (130.14.250.27) from '10.5.117.40' 2018-12-19T15:20:16 test-ngs_sra.1.0.0 err: connection failed while opening file within cryptographic module - error with https open 'https://sra-download.ncbi.nlm.nih.gov/traces/sra27/SRR/000000/SRR000001' /tmp/trizen-moritz/ncbi-vdb/src/ncbi-vdb-2.9.3/test/ngs/ngstest_sra.cpp(97): last checkpoint before exception "NGS_ReadCollectionMake(SRR000001) failed" ...

apolih commented on 2016-11-17 17:30

Thanks for the feedback. That looks like a Python2/Python3 error to me. Probably it was running Python 3 but the authors expect Python 2. I can see if I can patch this.

pwl commented on 2016-11-17 15:01

Hi, I tried installing this and got the following error: https://gist.github.com/pwl/742082b99188054d9cfa875d287890a3