Package Details: scilab 6.0.2-1

Git Clone URL: https://aur.archlinux.org/scilab.git (read-only)
Package Base: scilab
Description: A scientific software package for numerical computations.
Upstream URL: https://www.scilab.org
Licenses: GPL2, BSD, custom:CeCILL
Submitter: td123
Maintainer: eolianoe
Last Packager: eolianoe
Votes: 71
Popularity: 0.016010
First Submitted: 2011-12-07 20:36
Last Updated: 2019-03-04 20:28

Dependencies (37)

Sources (7)

Pinned Comments

Potomac commented on 2018-06-27 01:53

scilab 6 has a bug related to jogl jar library, if mesa version is >= 17.2 then scilab will be unable to use graphic hardware acceleration, no graph plotting,

http://forum.jogamp.org/Mesa-17-2-0-renderer-driver-name-change-error-causes-GLProfile-not-mapped-initialization-error-td4038176.html

in the console we can read these error logs : javax.media.opengl.GLException: X11GLXDrawableFactory - Could not initialize shared resources for :0 at jogamp.opengl.x11.glx.X11GLXDrawableFactory$SharedResourceImplementation.createSharedResource(X11GLXDrawableFactory.java:317) at jogamp.opengl.SharedResourceRunner.run(SharedResourceRunner.java:295) at java.lang.Thread.run(Thread.java:748) Caused by: java.lang.NullPointerException at jogamp.opengl.GLContextImpl.makeCurrent(GLContextImpl.java:625) at jogamp.opengl.GLContextImpl.makeCurrent(GLContextImpl.java:539) at jogamp.opengl.x11.glx.X11GLXDrawableFactory$SharedResourceImplementation.createSharedResource(X11GLXDrawableFactory.java:293) ... 2 more

the solution is to build scilab with a beta version of jogl (2.3.3), or to disable gpu hardware acceleration :

export LIBGL_ALWAYS_SOFTWARE=1

eolianoe commented on 2017-05-03 12:22

In order order to update (and/or build), you may need to uninstall scilab then build it and finally reinstall it to avoid conflicts between the two versions.

For now, scilab fails to run when launched from outside a terminal.

Latest Comments

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mcrai commented on 2017-07-28 12:21

@eolianoe: I am working on a build with pure makepkg. How can I provide the full build log? I have sent it to a text file.

I have never successfully installed Scilab within Manjaro. There may be artifacts from failed attempts.

eolianoe commented on 2017-07-27 21:26

@mcrai: please paste your log somewhere in order to be more readable. Regarding to your error, does scilab is already installed? If so, remove it to make the upgrade. You should use pure makepkg to build such big package, yaourt may break the build.

@Goby: your error is probably linked to the fact that scilab is not fully compatible with new hdf5 and for now, an unofficial patch is applied to make scilab works. Maybe this patch needs to be improved to fix your error.

mcrai commented on 2017-07-27 21:08

continuing my comment a few moments ago: Within the build log i found this section containing an error:

/bin/sh ../../libtool --tag=CXX --mode=link g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -version-number 6:0:0 -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,--no-as-needed -o libscixcos.la -rpath /usr/lib/scilab sci_gateway/cpp/libscixcos_la-sci_Xcos.lo sci_gateway/cpp/libscixcos_la-sci_warnBlockByUID.lo sci_gateway/cpp/libscixcos_la-sci_closeXcosFromScilab.lo sci_gateway/cpp/libscixcos_la-sci_xcosCellCreated.lo sci_gateway/cpp/libscixcos_la-sci_xcosUpdateBlock.lo sci_gateway/cpp/libscixcos_la-sci_xcosDiagramToScilab.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalLoad.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalCategoryAdd.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalDelete.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalMove.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalEnable.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalDisable.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalGenerateIcon.lo sci_gateway/cpp/libscixcos_la-sci_xcosPalGet.lo sci_gateway/cpp/libscixcos_la-sci_xcosConfigureXmlFile.lo sci_gateway/cpp/libscixcos_la-sci_xcosAddToolsMenu.lo sci_gateway/cpp/libscixcos_la-sci_loadXcos.lo sci_gateway/cpp/libscixcos_la-sci_xcosSimulationStarted.lo libscixcos-algo.la ../../modules/scicos/libsciscicos.la ../../modules/commons/libscicommons.la ../../modules/jvm/libscijvm.la -lpthread -ldl -lcurses -lm
libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/crtbeginS.o sci_gateway/cpp/.libs/libscixcos_la-sci_Xcos.o sci_gateway/cpp/.libs/libscixcos_la-sci_warnBlockByUID.o sci_gateway/cpp/.libs/libscixcos_la-sci_closeXcosFromScilab.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosCellCreated.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosUpdateBlock.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosDiagramToScilab.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalLoad.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalCategoryAdd.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalDelete.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalMove.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalEnable.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalDisable.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalGenerateIcon.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosPalGet.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosConfigureXmlFile.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosAddToolsMenu.o sci_gateway/cpp/.libs/libscixcos_la-sci_loadXcos.o sci_gateway/cpp/.libs/libscixcos_la-sci_xcosSimulationStarted.o -Wl,--whole-archive ./.libs/libscixcos-algo.a -Wl,--no-whole-archive -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos/.libs -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos_blocks/.libs -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs -Wl,-rpath -Wl,/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs -Wl,-rpath -Wl,/usr/lib/scilab -L/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos/.libs -L/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos_blocks/.libs ../../modules/scicos/.libs/libsciscicos.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos/.libs/libscisundials.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scicos_blocks/.libs/libsciscicos_blocks.so -lrt ../../modules/commons/.libs/libscicommons.so ../../modules/jvm/.libs/libscijvm.so -L/usr/lib/jvm/default/jre/lib/amd64 -L/usr/lib/jvm/default/jre/lib/amd64/server -lxml2 -lz -llzma -licui18n -licuuc -licudata -ljava -lverify -ljvm -lpthread -ldl -lcurses -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib/crtn.o -march=x86-64 -mtune=generic -O2 -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--no-as-needed -pthread -Wl,-soname -Wl,libscixcos.so.6 -o .libs/libscixcos.so.6.0.0
libtool: link: (cd ".libs" && rm -f "libscixcos.so.6" && ln -s "libscixcos.so.6.0.0" "libscixcos.so.6")
libtool: link: (cd ".libs" && rm -f "libscixcos.so" && ln -s "libscixcos.so.6.0.0" "libscixcos.so")
libtool: link: ( cd ".libs" && rm -f "libscixcos.la" && ln -s "../libscixcos.la" "libscixcos.la" )
Buildfile: /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/build.xml
[taskdef] Could not load definitions from resource checkstyletask.properties. It could not be found.

init:

compile:

jar:
[jar] Building jar: /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/jar/org.scilab.modules.xcos.jar

BUILD SUCCESSFUL
Total time: 0 seconds
make[3]: Leaving directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos'
make[2]: Leaving directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos'
Making all in mpi
make[2]: Entering directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/mpi'
/bin/sh ../../libtool --tag=CC --mode=compile mpicc -DHAVE_CONFIG_H -I. -I../../modules/core/includes -Iincludes/ -Isrc/c/ -I../../modules/ast/includes/ast/ -I../../modules/ast/includes/exps/ -I../../modules/ast/includes/operations/ -I../../modules/ast/includes/parse/ -I../../modules/ast/includes/symbol/ -I../../modules/ast/includes/system_env/ -I../../modules/ast/includes/types/ -I../../modules/ast/includes/analysis/ -I../../modules/string/includes -I../../modules/dynamic_link/includes -I../../modules/output_stream/includes -I../../modules/localization/includes -I../../modules/api_scilab/includes -I../../modules/elementary_functions/includes -pthread -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE -DNDEBUG -m64 -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT sci_gateway/c/libscimpi_la-sci_mpi_init.lo -MD -MP -MF sci_gateway/c/.deps/libscimpi_la-sci_mpi_init.Tpo -c -o sci_gateway/c/libscimpi_la-sci_mpi_init.lo `test -f 'sci_gateway/c/sci_mpi_init.c' || echo './'`sci_gateway/c/sci_mpi_init.c
libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I../../modules/core/includes -Iincludes/ -Isrc/c/ -I../../modules/ast/includes/ast/ -I../../modules/ast/includes/exps/ -I../../modules/ast/includes/operations/ -I../../modules/ast/includes/parse/ -I../../modules/ast/includes/symbol/ -I../../modules/ast/includes/system_env/ -I../../modules/ast/includes/types/ -I../../modules/ast/includes/analysis/ -I../../modules/string/includes -I../../modules/dynamic_link/includes -I../../modules/output_stream/includes -I../../modules/localization/includes -I../../modules/api_scilab/includes -I../../modules/elementary_functions/includes -pthread -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE -DNDEBUG -m64 -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT sci_gateway/c/libscimpi_la-sci_mpi_init.lo -MD -MP -MF sci_gateway/c/.deps/libscimpi_la-sci_mpi_init.Tpo -c sci_gateway/c/sci_mpi_init.c -fPIC -DPIC -o sci_gateway/c/.libs/libscimpi_la-sci_mpi_init.o

mcrai commented on 2017-07-27 21:06

I have left comments before on 2017-05-21 and 2017-05-09. Problems persist and help is still appreciated.

I have built with "yaourt scilab".

This is the end of the bulid log:

libtool: link: g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--no-as-needed -o .libs/scilab-bin modules/startup/src/cpp/scilab_bin-scilab.o modules/startup/src/c/scilab_bin-initMPI.o -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -L/usr/lib/openmpi -lstdc++ -L/usr/lib/jvm/default/jre/lib/amd64 -L/usr/lib/jvm/default/jre/lib/amd64/server -L/lib -L/lib64 ./modules/.libs/libscilab-cli.so -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. ./modules/console/.libs/libsciconsole.so ./modules/jvm/.libs/libscijvm.so ./modules/commons/.libs/libscicommons.so ./modules/.libs/libscilab.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/gui/.libs/libscigui.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/renderer/.libs/libscirenderer.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphics/.libs/libscigraphics.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_export/.libs/libscigraphic_export.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/console/.libs/libsciconsole.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/action_binding/.libs/libsciaction_binding.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_objects/.libs/libscigraphic_objects.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scinotes/.libs/libsciscinotes.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ui_data/.libs/libsciui_data.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_browser/.libs/libscihistory_browser.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/types/.libs/libscitypes-java.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/preferences/.libs/libscipreferences.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/external_objects_java/.libs/libsciexternal_objects_java.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs/libscijvm.so -ljava -lverify -ljvm /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/helptools/.libs/libscihelptools.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs/libscicommons.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/tclsci/.libs/libscitclsci.so -ltk8.6 -ltcl8.6 /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/.libs/libscilab-cli.so -lcurl -lnghttp2 -lssh2 -lpsl -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions/.libs/libscifunctions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/call_scilab/.libs/libscicall_scilab.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/localization/.libs/libscilocalization.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/special_functions/.libs/libscispecial_functions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/completion/.libs/libscicompletion.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_manager/.libs/libscihistory_manager.so -lpcreposix -lpcre /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/hdf5/.libs/libscihdf5.so -lhdf5 -lhdf5_hl -lfftw3 /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/statistics/.libs/libscistatistics.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ast/.libs/libsciast.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions_manager/.libs/libscifunctions_manager.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xml/.libs/libscixml.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/external_objects/.libs/libsciexternal_objects.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/slint/.libs/libscislint.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/coverage/.libs/libscicoverage.so -lxml2 -lz -llzma -licui18n -licuuc -licudata /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/mpi/.libs/libscimpi.so -lmpi /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/gui/.libs/libscigui-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphics/.libs/libscigraphics-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_export/.libs/libscigraphic_export-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/console/.libs/libsciconsole-minimal.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/action_binding/.libs/libsciaction_binding-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs/libscijvm-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/.libs/libscixcos-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_objects/.libs/libscigraphic_objects-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scinotes/.libs/libsciscinotes-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ui_data/.libs/libsciui_data-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_browser/.libs/libscihistory_browser-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs/libscicommons-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/preferences/.libs/libscipreferences-cli.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/tclsci/.libs/libscitclsci-disable.so -lblas -llapack -lgfortran -lquadmath -lpthread -ldl -lcurses -lm -pthread -Wl,-rpath -Wl,/usr/lib/scilab
g++ -DHAVE_CONFIG_H -I. -I./modules/core/includes -DWITHOUT_GUI -I./modules/ast/includes/ast/ -I./modules/ast/includes/exps/ -I./modules/ast/includes/operations/ -I./modules/ast/includes/parse/ -I./modules/ast/includes/symbol/ -I./modules/ast/includes/system_env/ -I./modules/ast/includes/types/ -I./modules/ast/includes/analysis/ -I./modules/console/includes/ -I./modules/output_stream/includes/ -I./modules/functions_manager/includes/ -I./modules/elementary_functions/includes/ -I./modules/fileio/includes/ -I./modules/string/includes/ -I./modules/history_manager/includes/ -I./modules/threads/includes/ -I./modules/api_scilab/includes/ -I./modules/localization/includes/ -I./modules/core/src/c/ -I./modules/dynamic_link/includes/ -I./modules/startup/src/c/ -pthread -pthread -D_FORTIFY_SOURCE=2 -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT modules/startup/src/cpp/scilab_cli_bin-scilab.o -MD -MP -MF modules/startup/src/cpp/.deps/scilab_cli_bin-scilab.Tpo -c -o modules/startup/src/cpp/scilab_cli_bin-scilab.o `test -f 'modules/startup/src/cpp/scilab.cpp' || echo './'`modules/startup/src/cpp/scilab.cpp
mv -f modules/startup/src/cpp/.deps/scilab_cli_bin-scilab.Tpo modules/startup/src/cpp/.deps/scilab_cli_bin-scilab.Po
gcc -DHAVE_CONFIG_H -I. -I./modules/core/includes -DWITHOUT_GUI -I./modules/ast/includes/ast/ -I./modules/ast/includes/exps/ -I./modules/ast/includes/operations/ -I./modules/ast/includes/parse/ -I./modules/ast/includes/symbol/ -I./modules/ast/includes/system_env/ -I./modules/ast/includes/types/ -I./modules/ast/includes/analysis/ -I./modules/console/includes/ -I./modules/output_stream/includes/ -I./modules/functions_manager/includes/ -I./modules/elementary_functions/includes/ -I./modules/fileio/includes/ -I./modules/string/includes/ -I./modules/history_manager/includes/ -I./modules/threads/includes/ -I./modules/api_scilab/includes/ -I./modules/localization/includes/ -I./modules/core/src/c/ -I./modules/dynamic_link/includes/ -I./modules/startup/src/c/ -pthread -pthread -D_FORTIFY_SOURCE=2 -D_LARGEFILE64_SOURCE -DNDEBUG -m64 -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -MT modules/startup/src/c/scilab_cli_bin-initMPI.o -MD -MP -MF modules/startup/src/c/.deps/scilab_cli_bin-initMPI.Tpo -c -o modules/startup/src/c/scilab_cli_bin-initMPI.o `test -f 'modules/startup/src/c/initMPI.c' || echo './'`modules/startup/src/c/initMPI.c
mv -f modules/startup/src/c/.deps/scilab_cli_bin-initMPI.Tpo modules/startup/src/c/.deps/scilab_cli_bin-initMPI.Po
/bin/sh ./libtool --tag=CXX --mode=link g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -L/usr/lib/openmpi -lmpi -lstdc++ -lgfortran -Wl,-O1,--sort-common,--as-needed,-z,relro,-z,now -Wl,--no-as-needed -o scilab-cli-bin modules/startup/src/cpp/scilab_cli_bin-scilab.o modules/startup/src/c/scilab_cli_bin-initMPI.o ./modules/libscilab-cli.la -lblas -llapack -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. -lpthread -ldl -lcurses -lgfortran -lm -lquadmath -lpthread -ldl -lcurses -lm
libtool: link: g++ -DNDEBUG -fno-stack-protector -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -pthread -Wl,-rpath -Wl,/usr/lib/openmpi -Wl,--enable-new-dtags -Wl,-O1 -Wl,--sort-common -Wl,--as-needed -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,--no-as-needed -o .libs/scilab-cli-bin modules/startup/src/cpp/scilab_cli_bin-scilab.o modules/startup/src/c/scilab_cli_bin-initMPI.o -L/usr/lib/openmpi -lstdc++ ./modules/.libs/libscilab-cli.so -lcurl -lnghttp2 -lssh2 -lpsl -lssl -lcrypto -lgssapi_krb5 -lkrb5 -lk5crypto -lcom_err /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions/.libs/libscifunctions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/call_scilab/.libs/libscicall_scilab.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/localization/.libs/libscilocalization.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/special_functions/.libs/libscispecial_functions.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/completion/.libs/libscicompletion.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_manager/.libs/libscihistory_manager.so -lpcreposix -lpcre /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/hdf5/.libs/libscihdf5.so -lhdf5 -lhdf5_hl -lfftw3 /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/statistics/.libs/libscistatistics.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ast/.libs/libsciast.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/functions_manager/.libs/libscifunctions_manager.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xml/.libs/libscixml.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/external_objects/.libs/libsciexternal_objects.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/slint/.libs/libscislint.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/coverage/.libs/libscicoverage.so -lxml2 -lz -llzma -licui18n -licuuc -licudata /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/mpi/.libs/libscimpi.so -lmpi /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/gui/.libs/libscigui-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphics/.libs/libscigraphics-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_export/.libs/libscigraphic_export-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/console/.libs/libsciconsole-minimal.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/action_binding/.libs/libsciaction_binding-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/jvm/.libs/libscijvm-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/xcos/.libs/libscixcos-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/graphic_objects/.libs/libscigraphic_objects-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/scinotes/.libs/libsciscinotes-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/ui_data/.libs/libsciui_data-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/history_browser/.libs/libscihistory_browser-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/commons/.libs/libscicommons-disable.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/preferences/.libs/libscipreferences-cli.so /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/tclsci/.libs/libscitclsci-disable.so -lblas -llapack -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1 -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../../../lib -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/7.1.1/../../.. -lgfortran -lquadmath -lpthread -ldl -lcurses -lm -pthread -Wl,-rpath -Wl,/usr/lib/scilab
echo "libstdc++ presence test skipped"
libstdc++ presence test skipped
./bin/scilab-cli -ns -noatomsautoload -quit -f modules/functions/scripts/buildmacros/buildmacros.sce
-- Build localization (.mo from .po) --
-- Building for en_US --
Creating ./locale/en_US/LC_MESSAGES/
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-- Building for pl_PL --
Creating ./locale/pl_PL/LC_MESSAGES/
-- Building for cs_CZ --
Creating ./locale/cs_CZ/LC_MESSAGES/
make[1]: Leaving directory '/tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0'
/usr/lib/jvm/default/bin/javadoc -noindex -nohelp -nonavbar -notree \
-d ./modules/javasci/javadoc \
-sourcepath ./modules/javasci/src/java:./modules/types/src/java::./modules/localization/src/java \
org.scilab.modules.javasci org.scilab.modules.types
Loading source files for package org.scilab.modules.javasci...
Loading source files for package org.scilab.modules.types...
Constructing Javadoc information...
Creating destination directory: "./modules/javasci/javadoc/"
Standard Doclet version 1.8.0_141
Building tree for all the packages and classes...
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70 warnings
-- Building documentation (en_US) --
LANG=en_US.UTF-8 LC_ALL=C SCI_DISABLE_TK=1 SCI_JAVA_ENABLE_HEADLESS=1 _JAVA_OPTIONS='-Djava.awt.headless=true' ./bin/scilab-adv-cli -noatomsautoload -nb -l en_US -nouserstartup -e "try xmltojar([],[],'en_US');catch disp(lasterror()); exit(-1);end;exit(0);"

Failed to execute SCI/modules/core/etc/core.start:

load: /tmp/yaourt-tmp-rainer/aur-scilab/src/scilab-6.0.0/modules/core/mac
ros/lib is not a valid lib file.

Goby commented on 2017-07-21 15:57

Hello, I am not sure that this is the right place to report my problem, but I have been searching for so long that I am a bit desperate right now. After having built and installed the package, trying to add a module creates HDF5 errors. For example, when running the command atomsSysemUdpate in scilab-cli, the first errors come from HDF5 :

HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
#000: H5G.c line 553 in H5Gget_info(): invalid argument
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
#000: H5G.c line 301 in H5Gcreate2(): not a location
major: Invalid arguments to routine
minor: Inappropriate type
#001: H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
#000: H5A.c line 265 in H5Acreate2(): not a location
major: Invalid arguments to routine
minor: Inappropriate type
#001: H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
#000: H5D.c line 121 in H5Dcreate2(): not a location ID
major: Invalid arguments to routine
minor: Inappropriate type
#001: H5Gloc.c line 253 in H5G_loc(): invalid object ID
major: Invalid arguments to routine
minor: Bad value
HDF5-DIAG: Error detected in HDF5 (1.10.0-patch1) thread 0:
#000: H5F.c line 749 in H5Fclose(): not a file ID
major: Invalid arguments to routine
minor: Inappropriate type

I've been trying a lot of things, but no way to get rid of this error. Perhaps am I missing something. Any help would be sooooo welcome.

eolianoe commented on 2017-07-12 10:27

@petronny: Ok, I see the errors and I added the dep but I think it's more related to openmpi

petronny commented on 2017-07-11 11:58

Generating ./modules/javasci/javadoc/serialized-form.html...
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Generating ./modules/javasci/javadoc/index.html...
Generating ./modules/javasci/javadoc/overview-summary.html...
70 warnings
-- Building documentation (en_US) --
LANG=en_US.UTF-8 LC_ALL=C SCI_DISABLE_TK=1 SCI_JAVA_ENABLE_HEADLESS=1 _JAVA_OPTIONS='-Djava.awt.headless=true' ./bin/scilab-adv-cli -noatomsautoload -nb -l en_US -nouserstartup -e "try xmltojar([],[],'en_US');catch disp(lasterror()); exit(-1);end;exit(0);"
--------------------------------------------------------------------------
The value of the MCA parameter "plm_rsh_agent" was set to a path
that could not be found:

plm_rsh_agent: ssh : rsh

Please either unset the parameter, or check that the path is correct
--------------------------------------------------------------------------
[calil:26214] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the local node in file ess_singleton_module.c at line 582
[calil:26214] [[INVALID],INVALID] ORTE_ERROR_LOG: Unable to start a daemon on the local node in file ess_singleton_module.c at line 166
--------------------------------------------------------------------------
It looks like orte_init failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during orte_init; some of which are due to configuration or
environment problems. This failure appears to be an internal failure;
here's some additional information (which may only be relevant to an
Open MPI developer):

orte_ess_init failed
--> Returned value Unable to start a daemon on the local node (-127) instead of ORTE_SUCCESS
--------------------------------------------------------------------------
--------------------------------------------------------------------------
It looks like MPI_INIT failed for some reason; your parallel process is
likely to abort. There are many reasons that a parallel process can
fail during MPI_INIT; some of which are due to configuration or environment
problems. This failure appears to be an internal failure; here's some
additional information (which may only be relevant to an Open MPI
developer):

eolianoe commented on 2017-07-06 18:07

@petronny: could you provide more information about your issue because I didn't findd any reference to ssh or rsh in the source code?

petronny commented on 2017-07-06 07:53

Hi, openssh or inetutils is needed as a make dependency.
The script is searching for ssh or rsh.

eolianoe commented on 2017-07-03 08:59

@mgd: did you change your CFLAGS or modify ocaml?

@ryukinix: no idea...