Package Details: rsem 1.3.3-1

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Package Base: rsem
Description: accurate quantification of gene and isoform expression from RNA-Seq data
Upstream URL:
Licenses: GPL3
Submitter: greyltc
Maintainer: greyltc
Last Packager: greyltc
Votes: 3
Popularity: 0.000000
First Submitted: 2015-03-18 10:58
Last Updated: 2020-11-01 13:52

Latest Comments

pwl commented on 2016-11-24 08:04


I managed to install the package without any trouble. I don't know if that was intentional but PKGBUILD didn't add /usr/bin/rsem to PATH. After adding it manually I tried to run one of the binaries and I got the following error. Do you have any idea where it might be coming from?

$ rsem-calculate-expression
Can't locate in @INC (you may need to install the rsem_perl_utils module) (@INC contains: /usr/bin/rsem /usr/lib/perl5/site_perl /usr/share/perl5/site_perl /usr/lib/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib/perl5/core_perl /usr/share/perl5/core_perl .) at /usr/bin/rsem/rsem-calculate-expression line 8.
BEGIN failed--compilation aborted at /usr/bin/rsem/rsem-calculate-expression line 8.

EDIT: I have just noticed that @apuapaquola had the same issue, copying the following entry from his PKGBUILD fixed the issue for me.

mv `find . -maxdepth 1 -type f -perm -u+x` "${pkgdir}/usr/bin/${pkgname}/."

apuapaquola commented on 2016-01-22 23:21

rsem-prepare-reference complains it can't find the perl module
and it is not present in the package.

I've patched PKGBUILD to copy rsem_perl_utile to the installation, and put it in