Package Details: r-mkl 4.0.5-1

Git Clone URL: https://aur.archlinux.org/r-mkl.git (read-only, click to copy)
Package Base: r-mkl
Description: Language and environment for statistical computing and graphics, linked to the Intel(R) MKL.
Upstream URL: http://www.r-project.org/
Keywords: hpc mathematics modelling r statistics
Licenses: GPL
Conflicts: microsoft-r-open, r
Provides: r=4.0.5
Submitter: giniu
Maintainer: alexanderp
Last Packager: alexanderp
Votes: 21
Popularity: 0.122569
First Submitted: 2010-05-06 00:10
Last Updated: 2021-04-07 14:53

Dependencies (25)

Required by (392)

Sources (5)

Latest Comments

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nessuno commented on 2018-03-17 20:33

I hope to be helpful, even though I'm not a so expert user.

I have the same error of @pat-s. I think that the problem is at row 1031 of Simple.R. It uses checkMatrix that requires to convert the sparse matrix in a "simple" matrix, but for the matrix named "S.na" it gives me

Error in as(S.na, "martix") : 
  no method or default for coercing “dgCMatrix” to “martix”

Enter a frame number, or 0 to exit   

1: as(S.na, "martix")

Selection: as(S.na, "matrix")
Enter an item from the menu, or 0 to exit

But it gives me errors also in other three files

  • Comparisons.Rnw
  • sparseModels.Rnw
  • mgcv-parallel.R

but I didn't understand precisely where by the moment.

Said that, if I skip them, by killing the R process each time (I don't how to do it in a cleaner way), it compiles and everithing seems to work then. But I don't know if it's ok or not.

Hoping it can help, let me know if I can do something else.

pat-s commented on 2018-03-17 11:39

Here's a gist: https://gist.github.com/pat-s/09029269cf02a8e5642a0f81dcf77cd6

Idk which additional information you would need. Just tell me :)

As said, this happens with the standard PKGBUILD and gcc v7.3

alexanderp commented on 2018-03-16 20:11

Updated to 3.4.4

@jbmorgado and @pat-s: I cannot reproduce the Simple.R issue on my machine when compiling with gcc. Only when compiling with icc

Can you send a log file with more information?

pat-s commented on 2018-03-11 22:46

I was able to get it building by commenting out the "check" section of the PKGBUILD:

check() { cd R-${pkgver} make check-recommended }

pat-s commented on 2018-03-11 22:40

@alexanderp I am also stuck at the same issue as @jbmorgado. Its stuck running the test script of the "Matrix" package called "Simple.R". Building with gcc. Its the default anyways in the current PKGBUILD.

alexanderp commented on 2018-02-17 10:47

@jbmorgado, make sure you're compiling with gcc and not with icc, i.e. the _CC="icc" line should be commented out. Unfortunately, R seems to be incompatible with recent releases of the Intel compilers.

jbmorgado commented on 2018-02-10 11:29

Can't compile this.

Gets stuck for hours during compilation at: "Running ‘Simple.R’"

mys_721tx commented on 2017-11-16 17:29

icc 18.0.1 is out, it should fix the gcc 7.0 compatibility issue

https://software.intel.com/en-us/forums/intel-c-compiler/topic/742701

alexanderp commented on 2017-04-24 18:40

Yes, compilation was fixed with my last update on 2017-03-06.

gergi commented on 2017-04-24 07:29

Compiles again smoothly.

zlib issue got fixed in
https://stat.ethz.ch/pipermail/r-help//2017-January/444162.html