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Package Details: r-mkl 3.6.1-1
Git Clone URL: | https://aur.archlinux.org/r-mkl.git (read-only) |
---|---|
Package Base: | r-mkl |
Description: | Language and environment for statistical computing and graphics, linked to the Intel(R) MKL. |
Upstream URL: | http://www.r-project.org/ |
Keywords: | hpc mathematics modelling r statistics |
Licenses: | |
Conflicts: | |
Provides: | |
Submitter: | giniu |
Maintainer: | alexanderp |
Last Packager: | alexanderp |
Votes: | 19 |
Popularity: | 0.50 |
First Submitted: | 2010-05-06 00:10 |
Last Updated: | 2019-07-11 20:06 |
Dependencies (26)
- bzip2 (bzip2-git, bzip2-rustify-git, bzip2-with-lbzip2-symlinks)
- curl (curl-http2-git, curl-git)
- gcc-fortran (gcc-fortran-multilib-x32, gcc-fortran-multilib-git, gcc-fortran-git)
- gcc-libs (gcc-libs-multilib-x32, gcc-libs-multilib-git, fastgcc, gcc-libs-git)
- icu (icu-git)
- intel-common-libs
- intel-mkl (intel-mkl-slim, intel-mkl-bin)
- libjpeg (libjpeg-droppatch, mozjpeg-git, mozjpeg, libjpeg-turbo)
- libpng (libpng-git)
- libtiff (libtiff-git)
- libxmu
- libxt
- ncurses (ncurses-nohex)
- openmp (openmp-svn)
- pango (pango-ubuntu, pango-git)
- pcre (pcre-svn)
- perl (perl-git)
- readline (readline-athame-git)
- unzip (unzip-natspec, unzip-iconv)
- xz (xz-git, xz-static-git)
- zip (zip-natspec)
- zlib (zlib-asm, zlib-static, zlib-git)
- java-environment (jdk5, jdk9-openj9-bin, tuxjdk, jdk7-openjdk-infinality, java-8-openjdk-shenandoah, jdk8-openjdk-infinality, java-gcj-compat, jdk10-openjdk-openj9-bin, jdk9, zulu-10-bin, jdk-devel, jdk10, jdk-dcevm, jdk8-arm, jdk8-arm64, jdk8-openjdk-shenandoah, jdk8-openjdk-jetbrains, jdk6, jdk-arm, jdk12-openj9-bin, zulu-12-bin, jetbrains-jre, jetbrains-jre8, java-openjdk-bin, jdk13-openj9-bin, java-openjdk-ea-bin, jdk8, jdk11, jdk8-openj9-bin, jdk7, jdk11-adoptopenjdk, zulu-embedded-jdk11, jdk, jdk-openj9-bin, jdk-adoptopenjdk, zulu-11-bin, jdk12, amazon-corretto-8, amazon-corretto-11, jdk11-openj9-bin, jdk8-jetbrains, jdk8-graalvm-bin, jdk7r1-j9-bin, jdk7-j9-bin, jdk8-j9-bin, jdk11-graalvm-bin, jdk11-openjdk-dcevm, jdk8-openjdk-dcevm, jdk-jetbrains, jdk-openjdk, jdk10-openjdk, jdk11-openjdk, jdk7-openjdk, jdk8-openjdk) (make)
- tk (tk85) (make)
- texlive-bin (texlive-bin-svn, texlive-full, texlive-installer) (optional) – LaTeX sty files
- tk (tk85) (optional) – tcl-tk interface
Required by (264)
- apache-spark (requires r) (optional)
- apache-spark-git (requires r) (optional)
- data-science-languages-meta (requires r)
- data-science-mkl-meta
- diffoscope-git (requires r) (optional)
- diffoscope-git (requires r) (check)
- dnaa (requires r)
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- fgbio-git (requires r) (check)
- folding (requires r)
- gatk-bin (requires r) (optional)
- grass6 (requires r) (optional)
- iramuteq-bin (requires r)
- jamovi-rbundle (requires r)
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- knime-desktop (requires r) (optional)
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- littler (requires r)
- littler (requires r) (make)
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- mange (requires r) (optional)
- mapdamage (requires r) (optional)
- mathematica (requires r) (optional)
- mathematica-09 (requires r) (optional)
- monetdb (requires r)
- monetdb (requires r) (make)
- nteract-bin (requires r) (optional)
- nvim-r (requires r) (optional)
- phantompeakqualtools (requires r)
- plink (requires r)
- pp-git (requires r) (optional)
- python-rchitect (requires r)
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- r-askpass (requires r)
- r-assertthat (requires r)
- r-backports (requires r)
- r-base64enc (requires r)
- r-bh (requires r)
- r-bindr (requires r)
- r-bindrcpp (requires r)
- r-biobase (requires r)
- r-biocgenerics (requires r)
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- r-formatr (requires r)
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- r-rcppeigen (requires r)
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- r-readr (requires r)
- r-repr (requires r)
- r-reshape2 (requires r)
- r-rgl (requires r)
- r-rhtslib (requires r)
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- r-rmarkdown (requires r)
- r-rsamtools (requires r)
- r-rstan (requires r)
- r-rstudioapi (requires r)
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- r-s4vectors (requires r)
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- r-sys (requires r)
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- r-viridislite (requires r)
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- r-zeallot (requires r)
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- rkward-git (requires r)
- rsem (requires r)
- rserve-sandbox-docker (requires r)
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- rstudio-desktop-bin (requires r)
- rstudio-desktop-git (requires r)
- rstudio-desktop-preview-bin (requires r)
- rstudio-server-bin (requires r)
- rstudio-server-git (requires r)
- shiny-server-git (requires r) (make)
- shiny-server-git (requires r)
- shogun (requires r)
- simpleitk (requires r) (make)
- simpleitk (requires r) (optional)
- taverna (requires r) (optional)
- zim-git (requires r) (optional)
Latest Comments
« First ‹ Previous 1 2 3 4 5 6 7 8 9 10 11 ... Next › Last »
mys_721tx commented on 2018-03-29 02:01
@alexanderp : I remembered it wrong. It was hung on the check stage.
alexanderp commented on 2018-03-29 01:45
@mys_721tx compilation with
icc
should be fixed now.@nessuno I'll look into it.
nessuno commented on 2018-03-28 13:26
There's still an error (I don't know if significant)
but now it works for me, thanks!
alexanderp commented on 2018-03-28 13:01
@mys_721tx, it must be due to a missing dependency from Intel Parallel Studio. I'll have another look. Just to clarify, you're getting the hangup during checking, not building, right?
mys_721tx commented on 2018-03-28 00:33
So I enabled icc and was hang on "Running ‘Simple.R’" when building Matrix. I have openmp and ice installed. It seems to be the same problem as the one jbmorgado had. What kind of log should I provide?
alexanderp commented on 2018-03-27 22:51
Thanks for the reports. The Matrix hangup issue when using
gcc
is fixed as of 3.4.4-2.Version 3.4.4-3 fixes compilation with
icc
as well.Please note that there's a bug in
intel-tbb_psxe
. Specifically,/etc/ld.so.conf.d/intel-tbb.conf
should contain/opt/intel/composerxe/linux/tbb/lib/intel64/gcc4.7
japhir commented on 2018-03-22 12:00
I have the same errors as nessuno. I htop to see what's causing the hang-up after waiting for a reasonable time, and then F9 sigterm the offending process. They are the same as he listed, plus a
checking of vignette output
thing that keeps hanging. It now succesfully builds, but somehow when I run a function from a package that falls back to fortran code, it causes a segfault :(.nessuno commented on 2018-03-17 20:33
I hope to be helpful, even though I'm not a so expert user.
I have the same error of @pat-s. I think that the problem is at row 1031 of Simple.R. It uses checkMatrix that requires to convert the sparse matrix in a "simple" matrix, but for the matrix named "S.na" it gives me
But it gives me errors also in other three files
but I didn't understand precisely where by the moment.
Said that, if I skip them, by killing the R process each time (I don't how to do it in a cleaner way), it compiles and everithing seems to work then. But I don't know if it's ok or not.
Hoping it can help, let me know if I can do something else.
pat-s commented on 2018-03-17 11:39
Here's a gist: https://gist.github.com/pat-s/09029269cf02a8e5642a0f81dcf77cd6
Idk which additional information you would need. Just tell me :)
As said, this happens with the standard PKGBUILD and gcc v7.3
alexanderp commented on 2018-03-16 20:11
Updated to 3.4.4
@jbmorgado and @pat-s: I cannot reproduce the
Simple.R
issue on my machine when compiling withgcc
. Only when compiling withicc
Can you send a log file with more information?