Package Details: python-itk 5.0.1-1

Git Clone URL: https://aur.archlinux.org/python-itk.git (read-only, click to copy)
Package Base: python-itk
Description: Open-source toolkit for multidimensional image analysis
Upstream URL: https://itk.org/
Licenses: Apache
Submitter: m-pilia
Maintainer: m-pilia
Last Packager: m-pilia
Votes: 1
Popularity: 0.000134
First Submitted: 2018-03-27 06:31
Last Updated: 2019-08-04 13:16

Latest Comments

ymermoud commented on 2020-05-14 15:28

I can't install this package. Having some compiler error related to hdf5. Have you seen this before?

[1429/5515] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2hdr.c.o
FAILED: Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2hdr.c.o 
/usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -IModules/ThirdParty/ZLIB/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/ZLIB/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src -IModules/ThirdParty/HDF5/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src -IModules/ThirdParty/HDF5/src/itkhdf5 -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fno-plt  -mtune=native -march=corei7 -Wno-uninitialized -Wno-unused-parameter -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow  -w -std=c99 -fstdarg-opt -pedantic -Wall -Wextra -fmessage-length=0 -O3 -DNDEBUG -fPIC -MD -MT Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2hdr.c.o -MF Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2hdr.c.o.d -o Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2hdr.c.o   -c /tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2hdr.c
during RTL pass: postreload
/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2hdr.c: In function ‘itk_H5B2__hdr_free’:
/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2hdr.c:684:1: internal compiler error: Illegal instruction
  684 | } /* end H5B2__hdr_free() */
      | ^
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://bugs.archlinux.org/> for instructions.
[1430/5515] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2.c.o
FAILED: Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2.c.o 
/usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -IModules/ThirdParty/ZLIB/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/ZLIB/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src -IModules/ThirdParty/HDF5/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src -IModules/ThirdParty/HDF5/src/itkhdf5 -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fno-plt  -mtune=native -march=corei7 -Wno-uninitialized -Wno-unused-parameter -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow  -w -std=c99 -fstdarg-opt -pedantic -Wall -Wextra -fmessage-length=0 -O3 -DNDEBUG -fPIC -MD -MT Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2.c.o -MF Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2.c.o.d -o Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2.c.o   -c /tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2.c
during RTL pass: postreload
/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2.c: In function ‘itk_H5B2_close’:
/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2.c:1476:1: internal compiler error: Illegal instruction
 1476 | } /* H5B2_close() */
      | ^
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://bugs.archlinux.org/> for instructions.
[1431/5515] Building C object Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2cache.c.o
FAILED: Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2cache.c.o 
/usr/bin/cc -DNDEBUG -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -IModules/ThirdParty/ZLIB/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/ZLIB/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src -IModules/ThirdParty/HDF5/src -I/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src -IModules/ThirdParty/HDF5/src/itkhdf5 -D_FORTIFY_SOURCE=2 -march=x86-64 -mtune=generic -O2 -pipe -fno-plt  -mtune=native -march=corei7 -Wno-uninitialized -Wno-unused-parameter -Wall -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow  -w -std=c99 -fstdarg-opt -pedantic -Wall -Wextra -fmessage-length=0 -O3 -DNDEBUG -fPIC -MD -MT Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2cache.c.o -MF Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2cache.c.o.d -o Modules/ThirdParty/HDF5/src/itkhdf5/src/CMakeFiles/hdf5-static.dir/H5B2cache.c.o   -c /tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2cache.c
during RTL pass: sched2
/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2cache.c: In function ‘H5B2__cache_leaf_serialize’:
/tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKs/Modules/ThirdParty/HDF5/src/itkhdf5/src/H5B2cache.c:1251:1: internal compiler error: Illegal instruction
 1251 | } /* H5B2__cache_leaf_serialize() */
      | ^
Please submit a full bug report,
with preprocessed source if appropriate.
See <https://bugs.archlinux.org/> for instructions.
[1434/5515] Building CXX object Modules/ThirdParty/GoogleTest/src/GTest-build/googletest/CMakeFiles/gtest.dir/src/gtest-all.cc.o
ninja: build stopped: subcommand failed.
FAILED: ITKp/src/ITK-stamp/ITK-build 
cd /tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKb && /usr/bin/cmake --build . && /usr/bin/cmake -E touch /tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build/ITKp/src/ITK-stamp/ITK-build
ninja: build stopped: subcommand failed.
Traceback (most recent call last):
  File "/usr/lib/python3.8/site-packages/skbuild/setuptools_wrap.py", line 577, in setup
    cmkr.make(make_args, env=env)
  File "/usr/lib/python3.8/site-packages/skbuild/cmaker.py", line 471, in make
    raise SKBuildError(

An error occurred while building with CMake.
  Command:
    "cmake" "--build" "." "--target" "install" "--config" "Release" "--"
  Source directory:
    /tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1
  Working directory:
    /tmp/packerbuild-1000/python-itk/python-itk/src/itk-5.0.1/_skbuild/linux-x86_64-3.8/cmake-build
Please see CMake's output for more information.
==> ERROR: A failure occurred in package().
    Aborting...
The build failed.