Package Details: itk-snap 3.6.0-5

Git Clone URL: https://aur.archlinux.org/itk-snap.git (read-only)
Package Base: itk-snap
Description: Software to segment structures in 3D medical images
Upstream URL: http://www.itksnap.org
Licenses: GPL3
Submitter: m-pilia
Maintainer: m-pilia
Last Packager: m-pilia
Votes: 0
Popularity: 0.000000
First Submitted: 2018-04-27 06:42
Last Updated: 2019-04-17 18:19

Latest Comments

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m-pilia commented on 2019-06-20 17:29

@astewartau: It seems you updated ITK and did not re-build ITK-SNAP afterwards, so it cannot find the dynamic libraries of ITK (since it is still linked to the old version).

astewartau commented on 2019-06-20 05:23

I get this error on attempting to run itksnap:

/usr/lib/snap-3.6.0/ITK-SNAP: error while loading shared libraries: libITKDICOMParser-4.13.so.1: cannot open shared object file: No such file or directory

huyizheng commented on 2019-05-29 03:46

@m-pilia Got it, thx.

One of the 3rd party repo I used has upgrade ITK to 5.0.0

m-pilia commented on 2019-05-28 15:46

@huyizheng: Are you using itk-git by chance? Because it seems your installation of ITK is missing the "itkVectorResampleImageFilter.h" header, that was deprecated a couple weeks ago. This package should build fine with ITK 4.13.1, but I am not sure it works with ITK 5.0.0.

huyizheng commented on 2019-05-28 14:42

I got this error:

[  0%] Building CXX object Submodules/greedy/CMakeFiles/greedyapi.dir/src/lddmm_data.cxx.o
/home/abc/.cache/yay/itk-snap/src/itk-snap/Submodules/greedy/src/lddmm_data.cxx:47:10: fatal error: itkVectorResampleImageFilter.h: No such file or directory
#include "itkVectorResampleImageFilter.h"
        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
make[2]: *** [Submodules/greedy/CMakeFiles/greedyapi.dir/build.make:63: Submodules/greedy/CMakeFiles/greedyapi.dir/src/lddmm_data.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:838: Submodules/greedy/CMakeFiles/greedyapi.dir/all] Error 2
make: *** [Makefile:163: all] Error 2
==> ERROR: A failure occurred in build().
    Aborting...

m-pilia commented on 2019-04-17 18:19

@asterwartau: Fixed, thanks! I must have missed it in the output of namcap.

astewartau commented on 2019-04-17 08:59

Me again! I believe there is now a runtime (but not a build) dependency on libjson-rpc-cpp-git as I receive the following error on launch without it:

/usr/lib/snap-3.6.0/ITK-SNAP: error while loading shared libraries: libjsoncpp.so.20: cannot open shared object file: No such file or directory

m-pilia commented on 2019-04-07 19:31

Thanks @astewartau, I updated the dependencies. It was a few months I did not build this, and I think something changed in how VTK is packaged.

astewartau commented on 2019-03-29 04:35

Thanks for that @m-pilia. That was partly my problem. It is now working, but I discovered that I needed to install a missing dependency which I believe should be added to the dependencies - namely pugixml which is in the community repository. Without it, I cannot build or run itksnap:

/usr/lib/snap-3.6.0/ITK-SNAP: error while loading shared libraries: libpugixml.so.1: cannot open shared object file: No such file or directory

m-pilia commented on 2019-03-13 20:35

Hi astewartau, it seems your binary is linked to the old version of the shared library. Have you re-built ITK-snap after updating VTK?