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Package Details: hdf5-openmpi-java 1.12.0-3
Git Clone URL: | https://aur.archlinux.org/hdf5-openmpi-java.git (read-only, click to copy) |
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Package Base: | hdf5-openmpi-java |
Description: | General purpose library and file format for storing scientific data (openmpi version including Java Native Interfaces) |
Upstream URL: | https://www.hdfgroup.org/hdf5 |
Licenses: | |
Conflicts: | |
Provides: | |
Replaces: | |
Submitter: | eleftg |
Maintainer: | MartinDiehl |
Last Packager: | MartinDiehl |
Votes: | 3 |
Popularity: | 0.000004 |
First Submitted: | 2017-10-19 22:30 |
Last Updated: | 2020-12-22 07:23 |
Dependencies (8)
- bash (bash-devel-git, bash-devel-static-git)
- libaec
- openmpi (openmpi-git, openmpi3, openmpi-gcc8, openmpi-gcc9, openmpi-cuda)
- zlib (zlib-static, zlib-git, zlib-asm, minizip-asm, zlib-ng-git)
- cmake (cmake-git) (make)
- gcc-fortran (gcc-fortran-multilib-x32, gcc-fortran-multilib-git, gcc-fortran-git) (make)
- java-environment (jdk5, tuxjdk, jdk7-openjdk-infinality, java-8-openjdk-shenandoah, jdk8-openjdk-infinality, java-gcj-compat, jdk9, zulu-10-bin, jdk-devel, jdk8-arm64, jdk6, jdk12-openj9-bin, zulu-12-bin, jdk12, jdk8-openjdk-dcevm, jdk11-graalvm-ee-bin, jdk8-arm, jdk13-openj9-bin, jdk9-openj9-bin, jdk10, jdk11-openjdk-dcevm, jdk8-openjdk-jetbrains, jdk8-openjdk-shenandoah, jdk10-openj9-bin, jdk14-openj9-bin, sapmachine-jdk-bin, jdk7, jdk8-j9-bin, java-openjdk-bin, jdk, jdk-openj9-bin, jdk-arm, jdk-adoptopenjdk, jdk11-adoptopenjdk, liberica-jdk-full-bin, jdk8-jetbrains, zulu-embedded-jdk8, amazon-corretto-11, liberica-jdk-8-full-bin, liberica-jdk-11-bin, liberica-jdk-11-full-bin, liberica-jdk-11-lite-bin, liberica-jre-11-bin, liberica-jre-11-full-bin, liberica-jre-8-full-bin, amazon-corretto-8, jdk8, jdk11, jdk8-graalvm-bin, jdk11-graalvm-bin, zulu-embedded-jdk, jdk7r1-j9-bin, jdk7-j9-bin, zulu-15-bin, zulu-14-bin, zulu-13-bin, jdk8-adoptopenjdk, zulu-embedded-jdk11, jdk-bcl, jdk8-openj9-bin, jdk11-openj9-bin, zulu-11-bin, zulu-8-bin, amazon-corretto-15, jdk-openj9, jdk11-jetbrains-imfix, jdk-jetbrains, java-openjdk-loom-ea-bin, jre-jetbrains, java-openjdk-ea-bin, jdk-openjdk, jdk11-openjdk, jdk7-openjdk, jdk8-openjdk) (make)
- time (time-git) (make)
Required by (201)
- abinit (requires hdf5)
- abinit-dev (requires hdf5)
- adios2 (requires hdf5)
- adios2-git (requires hdf5)
- alpscore (requires hdf5)
- alpscore-git (requires hdf5)
- alpscore-openmpi (requires hdf5)
- alpscore-openmpi-git (requires hdf5)
- animeloop-cli (requires hdf5)
- appcsxcad (requires hdf5)
- appcsxcad-git (requires hdf5)
- armadillo (requires hdf5) (optional)
- avogadrolibs-git (requires hdf5)
- caffe (requires hdf5)
- caffe-cmake-git (requires hdf5)
- caffe-cuda (requires hdf5)
- caffe-cuda-git (requires hdf5)
- caffe-git (requires hdf5)
- caffe-opencl-git (requires hdf5)
- casacore (requires hdf5) (optional)
- casacore-git (requires hdf5) (optional)
- cbflib (requires hdf5)
- cdo (requires hdf5) (make)
- cdo (requires hdf5)
- chronoengine (requires hdf5)
- chronoengine-git (requires hdf5)
- code_saturne (requires hdf5)
- csound-git (requires hdf5)
- csound-git (requires hdf5) (make)
- csxcad-git (requires hdf5)
- deal-ii (requires hdf5-openmpi) (optional)
- deepdetect-git (requires hdf5)
- dolfin (requires hdf5) (optional)
- ecal (requires hdf5)
- eman2 (requires hdf5)
- espressomd-git (requires hdf5-openmpi) (optional)
- espressomd-git (requires hdf5) (optional)
- ess-epics (requires hdf5)
- ethoscope-device (requires hdf5)
- expressionmatrix2-git (requires hdf5)
- flann (requires hdf5)
- fleur (requires hdf5)
- fleur-develop (requires hdf5) (make)
- freefem (requires hdf5)
- freefem-git (requires hdf5)
- gdal-curl (requires hdf5)
- gdal-ecw (requires hdf5)
- gdal-filegdb (requires hdf5)
- gdal-hdf4 (requires hdf5)
- gdal1 (requires hdf5)
- gdcm (requires hdf5) (make)
- gnss-sdr-git (requires hdf5)
- gnudatalanguage (requires hdf5)
- gnudatalanguage-gdlkernel (requires hdf5)
- h5cpp (requires hdf5) (make)
- h5hut (requires hdf5)
- h5utils (requires hdf5)
- h5utils-git (requires hdf5)
- hdf-eos-common (requires hdf5)
- hdf-eos2 (requires hdf5)
- hdf-eos5 (requires hdf5)
- hdf5-lz4-filter-git (requires hdf5)
- hdfview-git (requires hdf5-java)
- highfive (requires hdf5)
- howdy (requires hdf5)
- hydrus (requires hdf5)
- intel-caffe-git (requires hdf5)
- jdftx (requires hdf5-openmpi)
- jhdf5 (requires hdf5)
- jitterdebugger-git (requires hdf5)
- kallisto (requires hdf5)
- kealib (requires hdf5)
- kst-git (requires hdf5)
- lalcore (requires hdf5)
- lalsuite-git (requires hdf5)
- lib32-hdf5 (requires hdf5)
- lib32-opencv (requires hdf5) (make)
- libmatio (requires hdf5)
- libmatio-git (requires hdf5)
- libmesh (requires hdf5)
- lsdalton (requires hdf5)
- makerbot-desktop (requires hdf5)
- mantid (requires hdf5)
- mathgl (requires hdf5)
- med-openmpi (requires hdf5-openmpi)
- med3 (requires hdf5)
- meep (requires hdf5)
- meep-git (requires hdf5)
- minc-toolkit-v2 (requires hdf5)
- moose (requires hdf5)
- moose (requires hdf5) (make)
- mothur (requires hdf5) (make)
- mpb (requires hdf5)
- mpb-git (requires hdf5)
- mxnet (requires hdf5)
- mxnet-cuda (requires hdf5)
- mxnet-cuda-git (requires hdf5)
- mxnet-git (requires hdf5)
- mxnet-mkl (requires hdf5)
- mxnet-mkl-cuda (requires hdf5)
- nanopolish (requires hdf5)
- nanopolish-git (requires hdf5)
- ncbi-vdb (requires hdf5)
- ncl (requires hdf5)
- nixio (requires hdf5)
- nixio-git (requires hdf5)
- octave-hg (requires hdf5)
- octave40 (requires hdf5)
- opencv-cuda (requires hdf5) (make)
- opencv-cuda (requires hdf5) (optional)
- opencv-git (requires hdf5) (optional)
- opencv-git (requires hdf5) (make)
- opencv-java (requires hdf5) (make)
- opencv-with-python2-support (requires hdf5) (optional)
- opencv-with-python2-support (requires hdf5) (make)
- opencv-with-python2-support-samples (requires hdf5) (make)
- opencv-with-python2-support-samples (requires hdf5) (optional)
- opencv3-opt (requires hdf5) (make)
- opencv3-opt (requires hdf5) (optional)
- opencv3-opt-samples (requires hdf5) (optional)
- opencv3-opt-samples (requires hdf5) (make)
- openems (requires hdf5)
- openems-git (requires hdf5)
- openems-project-git (requires hdf5)
- openfast-git (requires hdf5)
- openmodelica-dev-omc (requires hdf5-openmpi)
- openmodelica-dev-omedit (requires hdf5-openmpi)
- openmodelica-dev-omnotebook (requires hdf5-openmpi)
- openmodelica-dev-omoptim (requires hdf5-openmpi)
- openmodelica-dev-omplot (requires hdf5-openmpi)
- openmodelica-dev-omshell (requires hdf5-openmpi)
- openmodelica-dev-qwt (requires hdf5-openmpi)
- openmodelica-omc (requires hdf5-openmpi)
- openmodelica-omedit (requires hdf5-openmpi)
- openmodelica-omnotebook (requires hdf5-openmpi)
- openmodelica-omplot (requires hdf5-openmpi)
- openmodelica-omshell (requires hdf5-openmpi)
- openmodelica-qwt (requires hdf5-openmpi)
- openms (requires hdf5)
- openturns (requires hdf5)
- oqapy (requires hdf5)
- orfeo-toolbox (requires hdf5)
- paraview-git (requires hdf5)
- paraview-nightly-bin (requires hdf5)
- paraview-opt (requires hdf5)
- perl-pdl-io-hdf5 (requires hdf5)
- petsc (requires hdf5-openmpi) (optional)
- petsc-complex (requires hdf5-openmpi)
- petsc-git (requires hdf5)
- photocrypt (requires hdf5)
- photocrypt-git (requires hdf5)
- python-albumentations (requires hdf5) (check)
- python-av1an (requires hdf5)
- python-av1an-git (requires hdf5)
- python-easyocr (requires hdf5)
- python-easyocr-git (requires hdf5)
- python-h5py-git (requires hdf5)
- python-imutils (requires hdf5)
- python-lvis-git (requires hdf5) (check)
- python-pyne (requires hdf5)
- python-pyspeckit (requires hdf5) (optional)
- python-stfio-git (requires hdf5)
- python2-pynio (requires hdf5)
- python2-pytables (requires hdf5) (make)
- python2-pytables (requires hdf5)
- qgis-crayfish-plugin (requires hdf5)
- qgis2-crayfish-plugin (requires hdf5)
- ros2-arch-deps (requires hdf5)
- sagecal (requires hdf5) (optional)
- sagecal-git (requires hdf5) (optional)
- sagecal-gpu (requires hdf5) (optional)
- scilab (requires hdf5)
- scilab-git (requires hdf5)
- sdaps-git (requires hdf5) (check)
- sdaps-git (requires hdf5) (optional)
- shogun (requires hdf5)
- silo (requires hdf5-openmpi)
- sirius (requires hdf5)
- sirius-git (requires hdf5)
- slurm-llnl (requires hdf5) (optional)
- slurm-llnl-dev (requires hdf5) (optional)
- slurm-llnl-git (requires hdf5) (optional)
- sra-tools (requires hdf5)
- swarm (requires hdf5)
- tad (requires hdf5)
- tad-git (requires hdf5)
- trilinos (requires hdf5-openmpi)
- trinnity-caffe-cuda-git (requires hdf5)
- trinnity-caffe-cudnn-git (requires hdf5)
- trinnity-caffe-git (requires hdf5)
- underworld2-git (requires hdf5-openmpi)
- usgs-phast (requires hdf5)
- vapoursynth-plugin-waifu2x-caffe-git (requires hdf5)
- vigra-git (requires hdf5)
- visit (requires hdf5)
- vtk-git (requires hdf5)
- vtk-raytracing-git (requires hdf5)
- vtk9 (requires hdf5)
- xdmf-git (requires hdf5)
- xmds (requires hdf5)
- zmeventnotification-git (requires hdf5)
Latest Comments
eleftg commented on 2020-03-04 01:23
1.12.0 is out today but it suffers mysterious build errors.
Need some time to patch it.
MartinDiehl commented on 2019-04-12 21:52
The patch for MPI 4 compatibility is not needed anymore. Please find an updated PKGBUILD for hdf5 1.10.5 on https://webshare.mpie.de/index.php?7e84df3a19
eleftg commented on 2019-02-19 22:57
@MartinDiehl: Thanks a lot for bringing this to my attention!
MartinDiehl commented on 2019-02-15 20:21
there is a new patch for MPI 4 compatibility
https://dbkt.hdfgroup.org/original/1X/2e17280ce6a1ede727c75e865c2e2af351f09696.diff
The modifications I used for this package are here https://webshare.mpie.de/index.php?685bdc8a61
greyltc commented on 2019-02-03 18:00
Please add hdf5-java to provides and conflicts.
eleftg commented on 2018-10-09 16:52
Now fixed. Thanks petronny
petronny commented on 2018-10-09 07:09
Please add
gcc-fortran
to makedepends.MartinDiehl commented on 2018-09-23 07:00
FYI, I have reported this already upstream: If HDF5 is build with cmake, the high level library for Fortran is called libhdf5_hl_fortran while it is called libhdf5hl_fortran when using configure. Also, the fortran module files are places in /usr/include/shared and /usr/include/static in the former case but in /usr/include in the latter.
Therefore, hdf5-openmpi-java does not fully replaces hdf5-openmpi at the moment. Would it be possible to use a similar, cmake based PKGBUILD as in hdf5-openmpi in hdf5-openmpi-java?
eleftg commented on 2018-06-18 22:19
Fixed. Thanks again
petronny commented on 2018-06-16 17:55
I get
like hdf4-java. You may need to set JAVADOC='javadoc -Xdoclint:none' too.