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Package Details: freebayes 1.2.0-1
Git Clone URL: | https://aur.archlinux.org/freebayes.git (read-only, click to copy) |
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Package Base: | freebayes |
Description: | A tool for finding polymorphisms in high throughput sequence data. |
Upstream URL: | https://github.com/ekg/freebayes |
Keywords: | bioinformatics call mutation polymorphism sequencing variant |
Licenses: | |
Conflicts: | |
Provides: | |
Submitter: | clintval |
Maintainer: | mrwillbarnz |
Last Packager: | clintval |
Votes: | 2 |
Popularity: | 0.002620 |
First Submitted: | 2017-12-07 01:38 |
Last Updated: | 2018-04-20 06:02 |
Dependencies (6)
- gcc-libs (gcc-libs-multilib-x32, fastgcc, gcc-libs-multilib-git, gcc-libs-git)
- openmp (openmp-svn, openmp-nvptx, llvm-toolchain-nightly-bin)
- zlib (zlib-static, zlib-git, zlib-asm, minizip-asm, zlib-ng-git)
- jsoncpp>=1.8.0 (jsoncpp-git)
- git (git-git) (make)
- cmake>=3.0 (cmake-git) (make)
Required by (0)
Sources (15)
- git+git://github.com/ekg/bamtools.git#commit=e77a43f5097ea7eee432ee765049c6b246d49baa
- git+git://github.com/ekg/fastahack.git#commit=c68cebb4f2e5d5d2b70cf08fbdf1944e9ab2c2dd
- git+git://github.com/ekg/filevercmp.git#commit=1a9b779b93d0b244040274794d402106907b71b7
- git+git://github.com/ekg/freebayes.git#commit=40155b407a4bead708aaafcadf7904854c411275
- git+git://github.com/ekg/fsom.git#commit=a6ef318fbd347c53189384aef7f670c0e6ce89a3
- git+git://github.com/ekg/intervaltree.git#commit=dbb4c513d1ad3baac516fc1484c995daf9b42838
- git+git://github.com/ekg/multichoose.git#commit=73d35daa18bf35729b9ba758041a9247a72484a5
- git+git://github.com/ekg/smithwaterman.git#commit=84c08d7eae7211d87fbcb1871dae20e6c2041e96
- git+git://github.com/ekg/tabixpp.git#commit=80012f86dc22b13c75b73baf38195956db92473e
- git+git://github.com/google/googletest.git#commit=d225acc90bc3a8c420a9bcd1f033033c1ccd7fe0
- git+git://github.com/samtools/htslib.git#commit=49fdfbda20acbd73303df3c7fef84f2d972c5f8d
- git+git://github.com/vcflib/vcflib.git#commit=5e3ce04f758c6df16bc4d242b18a24d725d2e6e5
- git+git://github.com/walaj/bwa.git#commit=c02766e3c34ac3f4af9842e20a54b7f9f4b36d0b
- git+git://github.com/walaj/fermi-lite.git#commit=5bc90f8d70e2b66184eccbd223a3be714c914365
- git+git://github.com/walaj/SeqLib.git#commit=5941c68c13abca7271931bb8f6892287f3bf6d12
Latest Comments
clintval commented on 2018-08-30 21:25
You're correct! Oddly enough the PKGBUILD builds the second time you run
makepkg
. I need to debug. Thanks for reporting.benwbooth commented on 2018-08-27 21:34
Im getting compile errors when trying to build:
clintval commented on 2018-04-20 06:05
Although this is built using only hashes from Git repositories it should be locked down to the version as I paired every commit correctly.