Package Details: freebayes 1.2.0-1

Git Clone URL: https://aur.archlinux.org/freebayes.git (read-only, click to copy)
Package Base: freebayes
Description: A tool for finding polymorphisms in high throughput sequence data.
Upstream URL: https://github.com/ekg/freebayes
Keywords: bioinformatics call mutation polymorphism sequencing variant
Licenses: MIT
Conflicts: freebayes
Provides: freebayes
Submitter: clintval
Maintainer: mrwillbarnz
Last Packager: clintval
Votes: 2
Popularity: 0.054511
First Submitted: 2017-12-07 01:38
Last Updated: 2018-04-20 06:02

Required by (0)

Sources (15)

Latest Comments

clintval commented on 2018-08-30 21:25

You're correct! Oddly enough the PKGBUILD builds the second time you run makepkg. I need to debug. Thanks for reporting.

benwbooth commented on 2018-08-27 21:34

Im getting compile errors when trying to build:

g++ -march=x86-64 -mtune=generic -O2 -pipe -fstack-protector-strong -fno-plt -O3 -c -o SmithWatermanGotoh.o SmithWatermanGotoh.cpp -I.
In file included from ../vcflib/src/Variant.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:197: Variant.o] Error 1
In file included from AlleleParser.h:31,
                 from DataLikelihood.h:20,
                 from DataLikelihood.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
In file included from AlleleParser.h:31,
                 from ResultData.h:10,
                 from Marginals.h:6,
                 from Marginals.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:158: DataLikelihood.o] Error 1
make[1]: *** [Makefile:161: Marginals.o] Error 1
In file included from AlleleParser.h:31,
                 from ResultData.h:10,
                 from ResultData.cpp:1:
../vcflib/src/Variant.h:18:10: fatal error: tabix.hpp: No such file or directory
 #include "tabix.hpp"
          ^~~~~~~~~~~
compilation terminated.
make[1]: *** [Makefile:164: ResultData.o] Error 1

clintval commented on 2018-04-20 06:05

Although this is built using only hashes from Git repositories it should be locked down to the version as I paired every commit correctly.