Package Details: bowtie2 2.3.5.1-1

Git Clone URL: https://aur.archlinux.org/bowtie2.git (read-only, click to copy)
Package Base: bowtie2
Description: Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence.
Upstream URL: http://bowtie-bio.sourceforge.net/bowtie2
Licenses: GPL3
Submitter: stratust
Maintainer: greyltc
Last Packager: greyltc
Votes: 15
Popularity: 0.000122
First Submitted: 2012-06-11 18:27
Last Updated: 2019-08-23 13:53

Dependencies (2)

Required by (5)

Sources (1)

Latest Comments

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greyltc commented on 2016-05-10 12:16

Actually, I take issue with package maintainers specifying arch = ('x86_64' 'i686') for no apparent reason. Why shouldn't I allow this package to build under arm or any other architecture? (Though I haven't tested it outside of x86_64, I assume there's nothing architecture specific in the source).

greyltc commented on 2016-05-10 11:58

Yep. I just noticed that too. I'm in the process of gathering the logs to submit an issue about it to their project on github.

amos commented on 2016-05-10 11:56

Now with 2.2.9:
http://pastebin.com/NQ7B1GVK
It seems that despite their claims, tbb is still broken.

amos commented on 2016-05-10 11:43

Could you please upgrade to this?
http://pastebin.com/KxWVwcG2

arch should be ('x86_64' 'i686') instead of ('any'), since this is a compiled package.
Also, it is better to add prefix="/usr" to the make install line so the binaries are installed in /usr/bin instead of /usr/local/bin

Thanks!

greyltc commented on 2015-04-06 21:45

updated to 2.2.5

greyltc commented on 2015-02-10 18:39

I seem to be having trouble verifying the sha512 hash in in the PKGBUILD here for some unknown reason. Could you please change it to a md5sum?

md5sums=('d31294875092e76ebb061eadc7998582q')

http://hastebin.com/amimemuvel.cmake

vejnar commented on 2014-11-05 00:20

Could you please update?
http://pastebin.com/AZxdfsHA

Thanks

decryptedepsilon commented on 2014-03-31 20:41

Sure thing.... :)

stratust commented on 2014-03-31 18:52

@decryptedepsilon: I don't have time to maintain this package anymore, so you can adopt it if you want.

decryptedepsilon commented on 2014-03-31 10:47

Would you consider updating with this PKGBUILD?
http://pastebin.com/fPuPj6TK