Package Details: bowtie 1.2.3-1

Git Clone URL: (read-only, click to copy)
Package Base: bowtie
Description: Bowtie is an alignment tool for short nucleotide sequences against long templates
Upstream URL:
Keywords: science
Licenses: PerlArtistic
Submitter: Athemis
Maintainer: Athemis
Last Packager: Athemis
Votes: 8
Popularity: 0.000000
First Submitted: 2011-12-20 15:12
Last Updated: 2019-09-13 12:49

Latest Comments

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Ghabry commented on 2018-11-26 13:29

The build fails with gcc8, you must apply the following patch from the upstream repo to fix it:

sauliusl commented on 2015-01-16 11:43

PKGBUILD for 1.1.1:

sauliusl commented on 2015-01-15 17:02

The paste below is broken, here's how to update for 1.1.1:

vejnar commented on 2014-11-12 00:46

Updated for 1.1.1

balwierz commented on 2014-11-05 16:20

version 1.1.1 is out

wookietreiber commented on 2014-07-24 09:17

Please also add the scipts directory to $pkgdir/usr/bin!

balwierz commented on 2014-04-03 14:04

version 1.0.1 is out.

Athemis commented on 2013-06-26 14:31

Thanks! It's sufficient to just use 'uname -m' instead. I added a patch in the updated package.

Anonymous comment on 2013-06-24 18:14

Makefile uses uname -p to look for x86_64 architecture on line 110, but that and the -i flag kinda got dropped:

I changed line 110 to the following, which works for me:
ifneq (0, $(shell grep flags /proc/cpuinfo | grep lm -c))

Hope this is the right place to put this.

Athemis commented on 2012-07-31 22:51

Now correctly builds with gcc-4.7