45 packages found. Page 1 of 1.

Name Version Votes Popularity? Description Maintainer
zrythm-debug-git 0.7.474.r45.g4ef3c551-1 1 0.09 a highly automated and intuitive digital audio workstation milk
stampy 1.0.32-1 1 0.00 Mapper of short reads from illumina sequencing machines onto a reference genome iosonofabio
sniffles 1.0.11-1 0 0.00 Structural variation caller using third generation sequencing tmiller
samtools 1.10-3 28 0.05 tools for manipulating next-generation sequencing data viralstitch
r-rhtslib 1.20.0-1 0 0.00 HTSlib high-throughput sequencing library as an R package greyltc
r-dada2 1.16.0-1 0 0.00 Accurate, high-resolution sample inference from amplicon sequencing data greyltc
qualimap 2.2.1-2 0 0.00 Utility to evaluate the quality of next-generation sequencing data orphan
quake-bio 0.3.1-2 0 0.00 A package to correct Illumina DNA sequencing reads Synchronicity
python2-htseq 0.11.0-1 3 0.00 framework to process and analyze data from high-throughput sequencing assays orphan
python2-deeptools 2.4.1-1 1 0.00 user-friendly tools for the normalization and visualization of deep-sequencing data decryptedepsilon
python2-cutadapt 1.12-1 2 0.00 trim adapters from high-throughput sequencing reads orphan
python-htseq 0.11.2-1 0 0.00 library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments greyltc
python-cutadapt 2.10-2 3 0.48 Trim adapters from high-throughput sequencing reads ndowens04
python-bcbio-nextgen 1.1.0-00 0 0.00 Best-practice pipelines for fully automated high throughput sequencing analysis mollitz
preseq 2.0.2-1 0 0.00 A tool for predicting and estimating the complexity of a genomic sequencing library, equivalent to predicting and estimating the number of redundant reads from a given sequencing depth. greyltc
picard-tools 2.20.1-1 7 0.00 set of tools for working with next generation sequencing data in the BAM format greyltc
pash-mapper 3.01.01-2 0 0.00 A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massively parallel DNA sequencing orphan
ngs-python 2.10.0-1 0 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. gamanakis
ngs 2.10.0-2 2 0.00 A new, domain-specific API for accessing reads, alignments and pileups produced from Next Generation Sequencing. apolih
ngmlr 0.2.7-1 0 0.00 Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes tmiller
musket 1.1-1 1 0.00 a parallel short-read error corrector for Illumina sequencing orphan
moss 1.1.0-2 1 0.00 Mostly orthogonal sequencing server jangler
mosdepth-bin 0.2.3-1 0 0.00 Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing orphan
mosdepth 0.2.3-1 1 0.42 Fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing orphan
kmc 2.0-2 0 0.00 Count k-mers in a set of reads from genome sequencing projects iosonofabio
htslib 1.10.2-1 16 0.00 library for high-throughput sequencing data formats viralstitch
htscodecs 0.5-1 0 0.00 Custom compression for sequencing formats, e.g. CRAM mschu
hisat2 2.2.0-1 1 0.00 A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes flying-sheep
gatk-bin 4.0.6.0-1 1 0.59 Variant discovery in high-throughput bioinformatics sequencing data Pastafarianist
gatk 2:4.0.7.0-1 1 0.58 Variant discovery in high-throughput bioinformatics sequencing data mrwillbarnz
freebayes 1.2.0-1 2 0.58 A tool for finding polymorphisms in high throughput sequence data. mrwillbarnz
flexbar 2.5-1 1 0.00 flexible barcode and adapter removal for sequencing platforms decryptedepsilon
fgbio-git 0.4.0.r21.gc45e26f-1 0 0.00 Tools for working with genomic and high throughput sequencing data. orphan
expressionmatrix2-git 0.4-3 0 0.00 Software for exploration of gene expression data from single-cell RNA sequencing. iosonofabio
dwgsim-git r159.39a1bbb-3 0 0.00 Whole genome read simulator for Next-Generation Sequencing data orphan
dwgsim 0.1.12-1 0 0.00 Whole genome read simulator for Next-Generation Sequencing data orphan
dnaa 0.1.2-4 0 0.00 An analysis package for short reads from next-generation sequencing Synchronicity
cutepeaks 0.2.3-1 0 0.00 A simple viewer for Sanger sequencing files Stunts
cellranger 1.3.1-3 0 0.00 Data analysis for 10X Genomics sequencing libraries. iosonofabio
canu 1.9-1 0 0.00 Fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION) robymetallo
bowtie2-git v2.2.9.r9.g9c90266-1 0 0.00 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. greyltc
bowtie2 2.3.5.1-1 15 0.00 Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence. greyltc
bedtools 2.29.2-1 14 0.00 powerful toolset for genome arithmetic balwierz
beads 1.1-1 0 0.00 Bias Elimination Algorithm for Deep Sequencing. orphan
bcalm-git 2.2.0.r49.g890ea4a-1 1 0.02 constructs compacted de Bruijn graph from sequencing data Piezo

45 packages found. Page 1 of 1.