44 packages found. Page 1 of 1.

Name Version Votes Popularity? Description Maintainer
amos 3.1.0-3 2 0.00 A modular, open source whole-genome assembler Synchronicity
bamtools-git 20110606-1 1 0.00 API and toolkit for reading, writing, and manipulating BAM (genome alignment) files. benwbooth
bedtools-git v2.27.1.r0.g1de417b9-1 0 0.00 powerful toolset for genome arithmetic. orphan
dwgsim 0.1.12-1 0 0.00 Whole genome read simulator for Next-Generation Sequencing data orphan
dwgsim-git r159.39a1bbb-3 0 0.00 Whole genome read simulator for Next-Generation Sequencing data orphan
fragrep 2-1 0 0.00 Detect nucleotide pattern fragments in genomes that occur in a given order RaumZeit
fseq 1.84-1 1 0.00 software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser orphan
genometools 1.5.10-1 0 0.00 A unified set of bioinformatics tools for analyzing genomes mrwillbarnz
hapsembler 2.21-1 1 0.00 haplotype-specific genome assembly toolkit orphan
hisat2 2.2.1-1 1 0.00 A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes flying-sheep
kmc 2.0-2 0 0.00 Count k-mers in a set of reads from genome sequencing projects iosonofabio
magicblast-bin 1.5.0-2 0 0.00 Ncbi Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. SZanko
mash 2.2.2-2 0 0.00 Fast genome and metagenome distance estimation using MinHash kloetzl
metabat 0.32.4-1 0 0.00 An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities. iosonofabio
mummer 3.23-2 5 0.00 MUMmer is a program for rapidly aligning large genomes orphan
mummer64 3.23-1 0 0.00 MUMmer is a program for rapidly aligning large genomes. This is a 64-bit build with some fixes. benwbooth
ngmlr 0.2.7-1 0 0.00 Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes tmiller
otf-genome-git r4.e991e65-2 0 0.00 Thin sans-serif display font by Alfredo Marco Pradil Ordoviz
pirs 1.10-1 0 0.00 A program for simulating Illumina paired-end DNA reads from a genome Synchronicity
plink 1.07-2 0 0.00 Whole genome association analysis toolset Stunts
prodigal 2.6.3-1 0 0.00 Fast, reliable protein-coding gene prediction for prokaryotic genomes. iosonofabio
python-ncbi-genome-download 0.3.0-1 0 0.00 Scripts to download genomes from the NCBI FTP servers snowball
python-pyensembl 1.1.0-4 0 0.00 Python interface to ensembl reference genome metadata orphan
python2-ansigenome 0.6.0-1 0 0.00 Ansigenome is a command line tool designed to help you manage your Ansible roles analbeard
python2-cruzdb 0.5.6-3 0 0.00 Pythonic interface to the bioinformatics UCSC genome databses mrwillbarnz
python2-pyensembl 1.1.0-4 0 0.00 Python interface to ensembl reference genome metadata orphan
r-genomeinfodb 1.26.2-1 0 0.00 Utilities for manipulating chromosome names, including modifying them to follow a particular naming style greyltc
r-genomeinfodbdata 1.2.4-1 0 0.00 Species and taxonomy ID look up tables used by GenomeInfoDb dviktor
racon 1.4.20-1 0 0.00 Ultrafast consensus module for raw de novo genome assembly Chocobo1
racon-git 1.4.20.r0.g8185f8e-1 0 0.00 Ultrafast consensus module for raw de novo genome assembly Chocobo1
scrm 1.7.4-1 0 0.00 A Coalescent Simulator for Genome-Scale Biological Sequences orphan
soapdenovo 1.05-1 4 0.00 A novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. Synchronicity
stampy 1.0.32-1 1 0.00 Mapper of short reads from illumina sequencing machines onto a reference genome iosonofabio
ucsc-kent-genome-tools 405-1 4 0.00 UCSC Kent bioinformatics utilities: kent source utilities greyltc
ugene-bin 33.0-1 2 0.00 A free cross-platform genome analysis suite (binary release) orphan
ugene-full-bin 33.0-1 0 0.00 A free cross-platform genome analysis suite (full binary release) josecleiton
ugene-git 33.0.r1412.gacffc816ae-1 2 0.00 A free cross-platform genome analysis suite. WFCody
wgsim-git r14.a12da33-1 0 0.00 Whole genome read simulator from a reference genome orphan
wiggletools 1.2.8-1 1 0.00 Compute genome-wide statistics with composable iterators adsun
plink1.9-git 1.9.r40.gdcc7785a-1 1 0.00 whole-genome association analysis toolset, version 1.9 viralstitch
star-cshl 2.7.7a-1 5 0.00 STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays vejnar
bwa 0.7.17-1 10 0.00 Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome Piezo
artemis 18.1.0-1 2 0.00 A genome viewer and annotation tool that visualizes biological sequence features mrwillbarnz
bedtools 2.29.2-1 15 0.72 powerful toolset for genome arithmetic balwierz

44 packages found. Page 1 of 1.