| amos |
3.1.0-3 |
2 |
0.00 |
A modular, open source whole-genome assembler |
Synchronicity
|
| bamtools-git |
20110606-1 |
1 |
0.00 |
API and toolkit for reading, writing, and manipulating BAM (genome alignment) files. |
benwbooth
|
| bedtools-git |
v2.27.1.r0.g1de417b9-1 |
0 |
0.00 |
powerful toolset for genome arithmetic. |
orphan
|
| dwgsim |
0.1.12-1 |
0 |
0.00 |
Whole genome read simulator for Next-Generation Sequencing data |
orphan
|
| dwgsim-git |
r159.39a1bbb-3 |
0 |
0.00 |
Whole genome read simulator for Next-Generation Sequencing data |
orphan
|
| fragrep |
2-1 |
0 |
0.00 |
Detect nucleotide pattern fragments in genomes that occur in a given order |
RaumZeit
|
| fseq |
1.84-1 |
1 |
0.00 |
software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser |
orphan
|
| genometools |
1.5.10-1 |
0 |
0.00 |
A unified set of bioinformatics tools for analyzing genomes |
mrwillbarnz
|
| hapsembler |
2.21-1 |
1 |
0.00 |
haplotype-specific genome assembly toolkit |
orphan
|
| hisat2 |
2.2.1-1 |
1 |
0.00 |
A fast and sensitive alignment program for mapping next-generation sequencing reads against genomes |
flying-sheep
|
| kmc |
2.0-2 |
0 |
0.00 |
Count k-mers in a set of reads from genome sequencing projects |
iosonofabio
|
| magicblast-bin |
1.5.0-2 |
0 |
0.00 |
Ncbi Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. |
SZanko
|
| mash |
2.2.2-2 |
0 |
0.00 |
Fast genome and metagenome distance estimation using MinHash |
kloetzl
|
| metabat |
0.32.4-1 |
0 |
0.00 |
An Efficient Tool for Accurately Reconstructing Single Genomes from Complex Microbial Communities. |
iosonofabio
|
| mummer |
3.23-2 |
5 |
0.00 |
MUMmer is a program for rapidly aligning large genomes |
orphan
|
| mummer64 |
3.23-1 |
0 |
0.00 |
MUMmer is a program for rapidly aligning large genomes. This is a 64-bit build with some fixes. |
benwbooth
|
| ngmlr |
0.2.7-1 |
0 |
0.00 |
Long-read mapper designed to align PacBio or Oxford Nanopore to reference genomes |
tmiller
|
| otf-genome-git |
r4.e991e65-2 |
0 |
0.00 |
Thin sans-serif display font by Alfredo Marco Pradil |
Ordoviz
|
| pirs |
1.10-1 |
0 |
0.00 |
A program for simulating Illumina paired-end DNA reads from a genome |
Synchronicity
|
| plink |
1.07-2 |
0 |
0.00 |
Whole genome association analysis toolset |
Stunts
|
| prodigal |
2.6.3-1 |
0 |
0.00 |
Fast, reliable protein-coding gene prediction for prokaryotic genomes. |
iosonofabio
|
| python-ncbi-genome-download |
0.3.0-1 |
0 |
0.00 |
Scripts to download genomes from the NCBI FTP servers |
snowball
|
| python-pyensembl |
1.1.0-4 |
0 |
0.00 |
Python interface to ensembl reference genome metadata |
orphan
|
| python2-ansigenome |
0.6.0-1 |
0 |
0.00 |
Ansigenome is a command line tool designed to help you manage your Ansible roles |
analbeard
|
| python2-cruzdb |
0.5.6-3 |
0 |
0.00 |
Pythonic interface to the bioinformatics UCSC genome databses |
mrwillbarnz
|
| python2-pyensembl |
1.1.0-4 |
0 |
0.00 |
Python interface to ensembl reference genome metadata |
orphan
|
| r-genomeinfodb |
1.26.2-1 |
0 |
0.00 |
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style |
greyltc
|
| r-genomeinfodbdata |
1.2.4-1 |
0 |
0.00 |
Species and taxonomy ID look up tables used by GenomeInfoDb |
dviktor
|
| racon |
1.4.20-1 |
0 |
0.00 |
Ultrafast consensus module for raw de novo genome assembly |
Chocobo1
|
| racon-git |
1.4.20.r0.g8185f8e-1 |
0 |
0.00 |
Ultrafast consensus module for raw de novo genome assembly |
Chocobo1
|
| scrm |
1.7.4-1 |
0 |
0.00 |
A Coalescent Simulator for Genome-Scale Biological Sequences |
orphan
|
| soapdenovo |
1.05-1 |
4 |
0.00 |
A novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. |
Synchronicity
|
| stampy |
1.0.32-1 |
1 |
0.00 |
Mapper of short reads from illumina sequencing machines onto a reference genome |
iosonofabio
|
| ucsc-kent-genome-tools |
405-1 |
4 |
0.00 |
UCSC Kent bioinformatics utilities: kent source utilities |
greyltc
|
| ugene-bin |
33.0-1 |
2 |
0.00 |
A free cross-platform genome analysis suite (binary release) |
orphan
|
| ugene-full-bin |
33.0-1 |
0 |
0.00 |
A free cross-platform genome analysis suite (full binary release) |
josecleiton
|
| ugene-git |
33.0.r1412.gacffc816ae-1 |
2 |
0.00 |
A free cross-platform genome analysis suite. |
WFCody
|
| wgsim-git |
r14.a12da33-1 |
0 |
0.00 |
Whole genome read simulator from a reference genome |
orphan
|
| wiggletools |
1.2.8-1 |
1 |
0.00 |
Compute genome-wide statistics with composable iterators |
adsun
|
| plink1.9-git |
1.9.r40.gdcc7785a-1 |
1 |
0.00 |
whole-genome association analysis toolset, version 1.9 |
viralstitch
|
| star-cshl |
2.7.7a-1 |
5 |
0.00 |
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays |
vejnar
|
| bwa |
0.7.17-1 |
10 |
0.00 |
Burrows-Wheeler Aligner maps low-divergent sequences against a large reference genome |
Piezo
|
| artemis |
18.1.0-1 |
2 |
0.00 |
A genome viewer and annotation tool that visualizes biological sequence features |
mrwillbarnz
|
| bedtools |
2.29.2-1 |
15 |
0.72 |
powerful toolset for genome arithmetic |
balwierz
|