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authorChristian Krause2016-05-29 20:31:49 +0200
committerChristian Krause2016-05-29 20:31:49 +0200
commit164976a8bdfebf93218c20a10c0e587f4671d507 (patch)
treefd81a7034ba08ef09663f8b6af7f1ce2646518dc
parentc362bf8a633616ffdbfda5f07460b7c1112c54eb (diff)
downloadaur-164976a8bdfebf93218c20a10c0e587f4671d507.tar.gz
picard-tools-2.4.1-1
-rw-r--r--.SRCINFO8
-rw-r--r--PKGBUILD10
2 files changed, 6 insertions, 12 deletions
diff --git a/.SRCINFO b/.SRCINFO
index 707f84e4e35..c3670617ac6 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,8 +1,8 @@
# Generated by mksrcinfo v8
-# Sat Mar 5 09:56:24 UTC 2016
+# Sun May 29 18:31:37 UTC 2016
pkgbase = picard-tools
pkgdesc = set of tools for working with next generation sequencing data in the BAM format
- pkgver = 2.1.1
+ pkgver = 2.4.1
pkgrel = 1
url = https://github.com/broadinstitute/picard
arch = i686
@@ -10,10 +10,10 @@ pkgbase = picard-tools
license = GPL2
depends = bash
depends = java-runtime>=6
- source = https://github.com/broadinstitute/picard/releases/download/2.1.1/picard-tools-2.1.1.zip
+ source = https://github.com/broadinstitute/picard/releases/download/2.4.1/picard-tools-2.4.1.zip
source = picard-profile.sh
source = picard.sh
- md5sums = 4593fc3a392158731612a7d595f0e505
+ md5sums = c59cfd7bd38ccdb334c70f675ae18c76
md5sums = ebcda2d2c55df6d05994252cf22a68c2
md5sums = 0987aa56f62f5e843bfa788cc93626c8
diff --git a/PKGBUILD b/PKGBUILD
index 91426996de4..90dd36c489d 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,7 +1,7 @@
# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
pkgname=picard-tools
-pkgver=2.1.1
+pkgver=2.4.1
pkgrel=1
pkgdesc='set of tools for working with next generation sequencing data in the BAM format'
arch=('i686' 'x86_64')
@@ -11,7 +11,7 @@ depends=('bash' 'java-runtime>=6')
source=("https://github.com/broadinstitute/picard/releases/download/$pkgver/$pkgname-$pkgver.zip"
'picard-profile.sh'
'picard.sh')
-md5sums=('4593fc3a392158731612a7d595f0e505'
+md5sums=('c59cfd7bd38ccdb334c70f675ae18c76'
'ebcda2d2c55df6d05994252cf22a68c2'
'0987aa56f62f5e843bfa788cc93626c8')
@@ -22,12 +22,6 @@ package() {
install -Dm755 $f $pkgdir/usr/share/java/picard-tools/$f
done
- install -Dm755 libIntelDeflater.so $pkgdir/usr/lib/libIntelDeflater.so
-
- pushd $pkgdir/usr/share/java/picard-tools > /dev/null
- ln -s ../../../lib/libIntelDeflater.so
- popd > /dev/null
-
install -Dm755 $srcdir/picard.sh $pkgdir/usr/bin/picard
install -Dm755 $srcdir/picard-profile.sh $pkgdir/etc/profile.d/picard.sh
}