summarylogtreecommitdiffstats
diff options
context:
space:
mode:
authorChristian Krause2016-01-05 22:23:41 +0100
committerChristian Krause2016-01-05 22:23:41 +0100
commit8cd75658eca30ccbca3ac7ac76b7c7b48b3af7b2 (patch)
tree6a79998fd56de8c60ecae7fe4a00d30d7bca6991
parent1c2796be5e1bbb41b62b194498132d25e8bdf5f1 (diff)
downloadaur-8cd75658eca30ccbca3ac7ac76b7c7b48b3af7b2.tar.gz
blast+-2.3.0-1
-rw-r--r--.SRCINFO10
-rw-r--r--PKGBUILD17
-rw-r--r--typeinfo.patch11
3 files changed, 8 insertions, 30 deletions
diff --git a/.SRCINFO b/.SRCINFO
index b91b2101493..09d757744d4 100644
--- a/.SRCINFO
+++ b/.SRCINFO
@@ -1,6 +1,8 @@
+# Generated by mksrcinfo v8
+# Tue Jan 5 21:22:57 UTC 2016
pkgbase = blast+
pkgdesc = finds regions of similarity between biological sequences
- pkgver = 2.2.31
+ pkgver = 2.3.0
pkgrel = 1
url = http://blast.ncbi.nlm.nih.gov/
arch = i686
@@ -21,10 +23,8 @@ pkgbase = blast+
conflicts = cddlib
conflicts = proj
replaces = ncbi-blast
- source = ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.31/ncbi-blast-2.2.31+-src.tar.gz
- source = typeinfo.patch
- md5sums = f32bd2d2c66205c53c6981f94e1a0d54
- md5sums = 9c257a762ce4e7418e95a48723832a86
+ source = ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.3.0/ncbi-blast-2.3.0+-src.tar.gz
+ md5sums = 0f252f0edf6c92e18012622fc93083b0
pkgname = blast+
diff --git a/PKGBUILD b/PKGBUILD
index 74f49dad548..d9a8f019fdf 100644
--- a/PKGBUILD
+++ b/PKGBUILD
@@ -1,7 +1,7 @@
# Maintainer: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
pkgname=blast+
-pkgver=2.2.31
+pkgver=2.3.0
pkgrel=1
pkgdesc="finds regions of similarity between biological sequences"
arch=('i686' 'x86_64')
@@ -12,19 +12,8 @@ makedepends=('cpio')
conflicts=('blast' 'blast+-bin' 'ncbi-blast' 'ncbi-blast+' 'cddlib' 'proj')
provides=('blast' 'blast+-bin' 'ncbi-blast' 'ncbi-blast+')
replaces=('ncbi-blast')
-source=("ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz"
- 'typeinfo.patch')
-md5sums=('f32bd2d2c66205c53c6981f94e1a0d54'
- '9c257a762ce4e7418e95a48723832a86')
-
-prepare() {
- cd $srcdir/ncbi-blast-$pkgver+-src/c++
-
- patch -p1 -i $srcdir/typeinfo.patch
-
- sed -e '/if test "$with_mt" != "no" ; then/i compiler=GCC' \
- -i src/build-system/configure
-}
+source=("ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz")
+md5sums=('0f252f0edf6c92e18012622fc93083b0')
build() {
cd $srcdir/ncbi-blast-$pkgver+-src/c++
diff --git a/typeinfo.patch b/typeinfo.patch
deleted file mode 100644
index 5962080b91a..00000000000
--- a/typeinfo.patch
+++ /dev/null
@@ -1,11 +0,0 @@
-diff -aur c++/include/corelib/ncbistl.hpp c++.new/include/corelib/ncbistl.hpp
---- c++/include/corelib/ncbistl.hpp 2013-09-06 20:29:54.000000000 +0200
-+++ c++.new/include/corelib/ncbistl.hpp 2014-06-05 11:04:30.533234506 +0200
-@@ -37,6 +37,7 @@
-
- #include <common/ncbi_export.h>
- #include <string>
-+#include <typeinfo>
-
-
- // Get rid of some warnings in MSVC++