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authorJohn D Jones III2015-06-16 13:56:21 -0600
committerJohn D Jones III2015-06-16 13:56:21 -0600
commit2e49f9280426479084741c77ff0378e466147f57 (patch)
tree5beef1289aef408e98d3d4c7a3a1e30311ac8f18
downloadaur-2e49f9280426479084741c77ff0378e466147f57.tar.gz
Initial import
-rw-r--r--.SRCINFO17
-rw-r--r--PKGBUILD44
2 files changed, 61 insertions, 0 deletions
diff --git a/.SRCINFO b/.SRCINFO
new file mode 100644
index 00000000000..2efe92d7d85
--- /dev/null
+++ b/.SRCINFO
@@ -0,0 +1,17 @@
+pkgbase = bioperl-run-git
+ pkgdesc = Wrapper modules around many common bioinformatics applications and tools.
+ pkgver = 20100604
+ pkgrel = 1
+ url = http://www.bioperl.org/wiki/Run_package
+ arch = any
+ license = GPL
+ license = PerlArtistic
+ makedepends = perl-data-stag
+ makedepends = git
+ depends = perl
+ depends = perl-io-string
+ depends = bioperl-live-git
+ options = !emptydirs
+
+pkgname = bioperl-run-git
+
diff --git a/PKGBUILD b/PKGBUILD
new file mode 100644
index 00000000000..5ce9be5b3dd
--- /dev/null
+++ b/PKGBUILD
@@ -0,0 +1,44 @@
+# Maintainer: Thomas Dziedzic < gostrc at gmail >
+
+pkgname=bioperl-run-git
+pkgver=20100604
+pkgrel=1
+pkgdesc='Wrapper modules around many common bioinformatics applications and tools.'
+arch=('any')
+license=('GPL' 'PerlArtistic')
+url='http://www.bioperl.org/wiki/Run_package'
+depends=('perl' 'perl-io-string' 'bioperl-live-git')
+makedepends=('perl-data-stag' 'git')
+options=(!emptydirs)
+
+_gitroot='git://github.com/bioperl/bioperl-run.git'
+_gitname='bioperl-run'
+
+build() {
+ msg 'Getting sources...'
+ if [ -d $_gitname ]; then
+ cd $_gitname
+ git pull origin
+ else
+ git clone $_gitroot
+ cd $_gitname
+ fi
+ msg 'GIT checkout done or server timeout'
+ msg 'Starting make...'
+
+ # non-interactive, uses defaults
+ perl Build.PL < /dev/null
+
+ ./Build
+
+ ./Build install \
+ --install_base /usr \
+ --install_path lib=/usr/share/perl5/vendor_perl \
+ --install_path bindoc=/usr/share/man/man1 \
+ --install_path libdoc=/usr/share/man/man3 \
+ --destdir "$pkgdir"
+
+ # remove perllocal.pod and .packlist
+ find "$pkgdir" -name 'perllocal.pod' -delete
+ find "$pkgdir" -name '.packlist' -delete
+}